Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC19.71■□□□□ 0.75
BRCA1P38398 HIST2H2BC-201ENST00000498492 580 ntBASIC19.71■□□□□ 0.75
BRCA1P38398 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC19.71■□□□□ 0.75
BRCA1P38398 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC19.71■□□□□ 0.75
BRCA1P38398 AC025279.2-201ENST00000569730 653 ntBASIC19.71■□□□□ 0.75
BRCA1P38398 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 MIR4722-201ENST00000578292 60 ntBASIC19.71■□□□□ 0.75
BRCA1P38398 MIR4706-201ENST00000582134 82 ntBASIC19.71■□□□□ 0.75
BRCA1P38398 HCG18-245ENST00000602550 559 ntTSL 4 BASIC19.71■□□□□ 0.75
BRCA1P38398 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC19.71■□□□□ 0.75
BRCA1P38398 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 PCDHB17P-201ENST00000539533 2393 ntBASIC19.71■□□□□ 0.75
BRCA1P38398 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.71■□□□□ 0.75
BRCA1P38398 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
BRCA1P38398 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.71■□□□□ 0.75
BRCA1P38398 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC19.71■□□□□ 0.75
BRCA1P38398 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 GRN-222ENST00000639447 1314 ntTSL 2 BASIC19.71■□□□□ 0.75
BRCA1P38398 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC19.71■□□□□ 0.75
BRCA1P38398 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
BRCA1P38398 TEX30-203ENST00000376022 828 ntTSL 2 BASIC19.71■□□□□ 0.75
BRCA1P38398 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
BRCA1P38398 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC19.71■□□□□ 0.75
BRCA1P38398 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC19.71■□□□□ 0.75
BRCA1P38398 ARTN-209ENST00000479128 471 ntTSL 3 BASIC19.71■□□□□ 0.75
BRCA1P38398 TMEM198B-204ENST00000484016 896 ntBASIC19.71■□□□□ 0.75
BRCA1P38398 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC19.71■□□□□ 0.75
BRCA1P38398 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
BRCA1P38398 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
BRCA1P38398 SPCS2P2-201ENST00000603270 608 ntBASIC19.71■□□□□ 0.75
BRCA1P38398 AC091271.1-201ENST00000611877 1162 ntBASIC19.71■□□□□ 0.75
BRCA1P38398 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
BRCA1P38398 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRCA1P38398 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC19.7■□□□□ 0.74
BRCA1P38398 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRCA1P38398 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRCA1P38398 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.7■□□□□ 0.74
BRCA1P38398 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.7■□□□□ 0.74
BRCA1P38398 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC19.7■□□□□ 0.74
BRCA1P38398 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
BRCA1P38398 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC19.7■□□□□ 0.74
BRCA1P38398 AL591846.1-201ENST00000451736 433 ntBASIC19.7■□□□□ 0.74
BRCA1P38398 VDAC1P7-201ENST00000462417 847 ntBASIC19.7■□□□□ 0.74
BRCA1P38398 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC19.7■□□□□ 0.74
BRCA1P38398 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC19.7■□□□□ 0.74
BRCA1P38398 ADM-202ENST00000524948 584 ntTSL 2 BASIC19.7■□□□□ 0.74
BRCA1P38398 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
BRCA1P38398 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC19.7■□□□□ 0.74
BRCA1P38398 PAM16-215ENST00000577031 548 ntTSL 4 BASIC19.7■□□□□ 0.74
BRCA1P38398 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC19.7■□□□□ 0.74
BRCA1P38398 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC19.7■□□□□ 0.74
BRCA1P38398 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRCA1P38398 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
BRCA1P38398 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
BRCA1P38398 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRCA1P38398 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
BRCA1P38398 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
BRCA1P38398 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRCA1P38398 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC19.7■□□□□ 0.74
BRCA1P38398 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
BRCA1P38398 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
BRCA1P38398 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.69■□□□□ 0.74
BRCA1P38398 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
BRCA1P38398 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
BRCA1P38398 AC098818.2-201ENST00000564925 2320 ntBASIC19.69■□□□□ 0.74
BRCA1P38398 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC19.69■□□□□ 0.74
BRCA1P38398 CSH2-202ENST00000345366 598 ntTSL 5 BASIC19.69■□□□□ 0.74
BRCA1P38398 AC253536.4-201ENST00000440539 267 ntBASIC19.69■□□□□ 0.74
BRCA1P38398 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC19.69■□□□□ 0.74
BRCA1P38398 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC19.69■□□□□ 0.74
BRCA1P38398 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
BRCA1P38398 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC19.69■□□□□ 0.74
BRCA1P38398 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
BRCA1P38398 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.69■□□□□ 0.74
BRCA1P38398 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.69■□□□□ 0.74
BRCA1P38398 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.69■□□□□ 0.74
BRCA1P38398 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
BRCA1P38398 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms