Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PCDHB17P-201ENST00000539533 2393 ntBASIC15.64■□□□□ 0.09
COL5A1P20908 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL5A1P20908 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL5A1P20908 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
COL5A1P20908 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL5A1P20908 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL5A1P20908 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
COL5A1P20908 AC020916.1-201ENST00000587762 1774 ntBASIC15.64■□□□□ 0.09
COL5A1P20908 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL5A1P20908 AC078925.2-201ENST00000624013 1973 ntBASIC15.64■□□□□ 0.09
COL5A1P20908 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL5A1P20908 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL5A1P20908 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL5A1P20908 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.64■□□□□ 0.09
COL5A1P20908 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC15.64■□□□□ 0.09
COL5A1P20908 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
COL5A1P20908 NOP2-211ENST00000540228 668 ntTSL 2 BASIC15.64■□□□□ 0.09
COL5A1P20908 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.64■□□□□ 0.09
COL5A1P20908 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.64■□□□□ 0.09
COL5A1P20908 MIR4321-201ENST00000592276 80 ntBASIC15.64■□□□□ 0.09
COL5A1P20908 AC133552.6-201ENST00000613406 534 ntBASIC15.64■□□□□ 0.09
COL5A1P20908 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
COL5A1P20908 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
COL5A1P20908 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
COL5A1P20908 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
COL5A1P20908 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 HLA-A-202ENST00000376806 1854 ntBASIC15.63■□□□□ 0.09
COL5A1P20908 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
COL5A1P20908 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.63■□□□□ 0.09
COL5A1P20908 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.63■□□□□ 0.09
COL5A1P20908 AL162726.2-201ENST00000438986 1017 ntBASIC15.63■□□□□ 0.09
COL5A1P20908 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.63■□□□□ 0.09
COL5A1P20908 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.63■□□□□ 0.09
COL5A1P20908 Z97205.2-201ENST00000564697 1639 ntBASIC15.63■□□□□ 0.09
COL5A1P20908 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.63■□□□□ 0.09
COL5A1P20908 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 CYP4F24P-201ENST00000586049 1580 ntBASIC15.63■□□□□ 0.09
COL5A1P20908 AL512652.2-201ENST00000625156 1716 ntBASIC15.63■□□□□ 0.09
COL5A1P20908 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
COL5A1P20908 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL5A1P20908 AC026471.1-201ENST00000564629 3026 ntBASIC15.62■□□□□ 0.09
COL5A1P20908 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL5A1P20908 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.62■□□□□ 0.09
COL5A1P20908 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL5A1P20908 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL5A1P20908 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.62■□□□□ 0.09
COL5A1P20908 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.62■□□□□ 0.09
COL5A1P20908 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.62■□□□□ 0.09
COL5A1P20908 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC15.62■□□□□ 0.09
COL5A1P20908 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC15.62■□□□□ 0.09
COL5A1P20908 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.62■□□□□ 0.09
COL5A1P20908 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL5A1P20908 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
COL5A1P20908 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL5A1P20908 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
COL5A1P20908 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC15.62■□□□□ 0.09
COL5A1P20908 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.62■□□□□ 0.09
COL5A1P20908 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.62■□□□□ 0.09
COL5A1P20908 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL5A1P20908 AC080080.1-201ENST00000625121 2420 ntBASIC15.62■□□□□ 0.09
COL5A1P20908 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
COL5A1P20908 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL5A1P20908 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL5A1P20908 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
COL5A1P20908 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC15.62■□□□□ 0.09
COL5A1P20908 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL5A1P20908 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.62■□□□□ 0.09
COL5A1P20908 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
COL5A1P20908 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.61■□□□□ 0.09
COL5A1P20908 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL5A1P20908 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL5A1P20908 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
COL5A1P20908 AC245100.5-201ENST00000452108 331 ntBASIC15.61■□□□□ 0.09
COL5A1P20908 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.61■□□□□ 0.09
COL5A1P20908 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.61■□□□□ 0.09
COL5A1P20908 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC15.61■□□□□ 0.09
COL5A1P20908 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC15.61■□□□□ 0.09
COL5A1P20908 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL5A1P20908 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
COL5A1P20908 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL5A1P20908 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.61■□□□□ 0.09
COL5A1P20908 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL5A1P20908 AC018665.1-201ENST00000622927 1362 ntBASIC15.61■□□□□ 0.09
COL5A1P20908 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms