Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
XRCC1P18887 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
XRCC1P18887 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
XRCC1P18887 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
XRCC1P18887 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
XRCC1P18887 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.56■□□□□ 0.24
XRCC1P18887 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
XRCC1P18887 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.56■□□□□ 0.24
XRCC1P18887 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.56■□□□□ 0.24
XRCC1P18887 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.56■□□□□ 0.24
XRCC1P18887 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.56■□□□□ 0.24
XRCC1P18887 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
XRCC1P18887 AC107918.2-201ENST00000530817 355 ntBASIC16.56■□□□□ 0.24
XRCC1P18887 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
XRCC1P18887 REXO1L3P-201ENST00000622202 1288 ntBASIC16.56■□□□□ 0.24
XRCC1P18887 C20orf181-201ENST00000623918 480 ntBASIC16.56■□□□□ 0.24
XRCC1P18887 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
XRCC1P18887 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
XRCC1P18887 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.56■□□□□ 0.24
XRCC1P18887 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.56■□□□□ 0.24
XRCC1P18887 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
XRCC1P18887 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.56■□□□□ 0.24
XRCC1P18887 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
XRCC1P18887 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
XRCC1P18887 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
XRCC1P18887 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
XRCC1P18887 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
XRCC1P18887 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.55■□□□□ 0.24
XRCC1P18887 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.55■□□□□ 0.24
XRCC1P18887 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.55■□□□□ 0.24
XRCC1P18887 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
XRCC1P18887 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
XRCC1P18887 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.55■□□□□ 0.24
XRCC1P18887 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
XRCC1P18887 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
XRCC1P18887 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.55■□□□□ 0.24
XRCC1P18887 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 AL513480.1-201ENST00000451731 511 ntBASIC16.55■□□□□ 0.24
XRCC1P18887 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.55■□□□□ 0.24
XRCC1P18887 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.55■□□□□ 0.24
XRCC1P18887 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.55■□□□□ 0.24
XRCC1P18887 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.55■□□□□ 0.24
XRCC1P18887 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.55■□□□□ 0.24
XRCC1P18887 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.55■□□□□ 0.24
XRCC1P18887 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.55■□□□□ 0.24
XRCC1P18887 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.55■□□□□ 0.24
XRCC1P18887 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.55■□□□□ 0.24
XRCC1P18887 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.55■□□□□ 0.24
XRCC1P18887 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.55■□□□□ 0.24
XRCC1P18887 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
XRCC1P18887 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
XRCC1P18887 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
XRCC1P18887 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
XRCC1P18887 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
XRCC1P18887 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.54■□□□□ 0.24
XRCC1P18887 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.54■□□□□ 0.24
XRCC1P18887 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.54■□□□□ 0.24
XRCC1P18887 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
XRCC1P18887 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
XRCC1P18887 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.54■□□□□ 0.24
XRCC1P18887 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
XRCC1P18887 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.54■□□□□ 0.24
XRCC1P18887 MKNK2P1-201ENST00000437526 628 ntBASIC16.54■□□□□ 0.24
XRCC1P18887 YBX1P5-201ENST00000509441 847 ntBASIC16.54■□□□□ 0.24
XRCC1P18887 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
XRCC1P18887 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.54■□□□□ 0.24
XRCC1P18887 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.54■□□□□ 0.24
XRCC1P18887 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.54■□□□□ 0.24
XRCC1P18887 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.54■□□□□ 0.24
XRCC1P18887 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.54■□□□□ 0.24
XRCC1P18887 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
XRCC1P18887 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
XRCC1P18887 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
XRCC1P18887 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
XRCC1P18887 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
XRCC1P18887 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.54■□□□□ 0.24
XRCC1P18887 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms