Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
APOBP04114 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
APOBP04114 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC10.12□□□□□ -0.79
APOBP04114 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC10.12□□□□□ -0.79
APOBP04114 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
APOBP04114 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
APOBP04114 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
APOBP04114 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC10.12□□□□□ -0.79
APOBP04114 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC10.12□□□□□ -0.79
APOBP04114 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
APOBP04114 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC10.12□□□□□ -0.79
APOBP04114 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
APOBP04114 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC10.12□□□□□ -0.79
APOBP04114 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC10.12□□□□□ -0.79
APOBP04114 UFM1-202ENST00000379649 846 ntTSL 4 BASIC10.12□□□□□ -0.79
APOBP04114 MIR33B-201ENST00000385104 96 ntBASIC10.12□□□□□ -0.79
APOBP04114 AL355334.1-201ENST00000417713 215 ntBASIC10.12□□□□□ -0.79
APOBP04114 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.79
APOBP04114 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC10.12□□□□□ -0.79
APOBP04114 KRT8P37-201ENST00000451609 1420 ntBASIC10.12□□□□□ -0.79
APOBP04114 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.79
APOBP04114 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.79
APOBP04114 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
APOBP04114 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC10.11□□□□□ -0.79
APOBP04114 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC10.11□□□□□ -0.79
APOBP04114 OARD1-212ENST00000482515 832 ntTSL 2 BASIC10.11□□□□□ -0.79
APOBP04114 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC10.11□□□□□ -0.79
APOBP04114 AC025279.2-201ENST00000569730 653 ntBASIC10.11□□□□□ -0.79
APOBP04114 MIR5572-201ENST00000583188 137 ntBASIC10.11□□□□□ -0.79
APOBP04114 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC10.11□□□□□ -0.79
APOBP04114 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
APOBP04114 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC10.11□□□□□ -0.79
APOBP04114 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC10.11□□□□□ -0.79
APOBP04114 DPM2-202ENST00000373110 738 ntTSL 2 BASIC10.11□□□□□ -0.79
APOBP04114 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC10.11□□□□□ -0.79
APOBP04114 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC10.11□□□□□ -0.79
APOBP04114 HNRNPUP1-201ENST00000554987 333 ntBASIC10.11□□□□□ -0.79
APOBP04114 AC138951.2-201ENST00000623455 1161 ntBASIC10.11□□□□□ -0.79
APOBP04114 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC10.11□□□□□ -0.79
APOBP04114 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC10.11□□□□□ -0.79
APOBP04114 AL138688.1-201ENST00000624851 1594 ntBASIC10.11□□□□□ -0.79
APOBP04114 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
APOBP04114 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 COMP-202ENST00000425807 2292 ntTSL 2 BASIC10.11□□□□□ -0.79
APOBP04114 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 AC008764.6-201ENST00000595909 2069 ntBASIC10.11□□□□□ -0.79
APOBP04114 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
APOBP04114 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC10.11□□□□□ -0.79
APOBP04114 MTX1P1-201ENST00000440904 838 ntBASIC10.11□□□□□ -0.79
APOBP04114 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC10.11□□□□□ -0.79
APOBP04114 AC133539.2-201ENST00000604757 467 ntBASIC10.11□□□□□ -0.79
APOBP04114 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC10.11□□□□□ -0.79
APOBP04114 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC10.11□□□□□ -0.79
APOBP04114 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 INTS4P2-202ENST00000614726 2019 ntBASIC10.11□□□□□ -0.79
APOBP04114 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 AL645728.1-201ENST00000366221 2101 ntBASIC10.11□□□□□ -0.79
APOBP04114 AC087289.5-201ENST00000586076 3175 ntBASIC10.11□□□□□ -0.79
APOBP04114 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC10.11□□□□□ -0.79
APOBP04114 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC10.11□□□□□ -0.79
APOBP04114 AL591846.1-201ENST00000451736 433 ntBASIC10.11□□□□□ -0.79
APOBP04114 ADM-202ENST00000524948 584 ntTSL 2 BASIC10.11□□□□□ -0.79
APOBP04114 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC10.11□□□□□ -0.79
APOBP04114 HCG18-245ENST00000602550 559 ntTSL 4 BASIC10.11□□□□□ -0.79
APOBP04114 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
APOBP04114 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC10.11□□□□□ -0.79
APOBP04114 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
APOBP04114 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
APOBP04114 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC10.1□□□□□ -0.79
APOBP04114 BX323043.1-201ENST00000641006 1765 ntBASIC10.1□□□□□ -0.79
APOBP04114 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC10.1□□□□□ -0.79
APOBP04114 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
APOBP04114 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC10.1□□□□□ -0.79
APOBP04114 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
APOBP04114 FAM21FP-201ENST00000426241 1131 ntBASIC10.1□□□□□ -0.79
APOBP04114 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC10.1□□□□□ -0.79
APOBP04114 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
APOBP04114 MIR3619-201ENST00000579667 83 ntBASIC10.1□□□□□ -0.79
APOBP04114 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
APOBP04114 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
APOBP04114 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC10.1□□□□□ -0.79
APOBP04114 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
APOBP04114 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
APOBP04114 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
APOBP04114 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC10.1□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms