Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC23■■□□□ 1.27
MSH5O43196 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC23■■□□□ 1.27
MSH5O43196 COPE-211ENST00000600932 1144 ntTSL 5 BASIC23■■□□□ 1.27
MSH5O43196 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC23■■□□□ 1.27
MSH5O43196 AC080013.4-201ENST00000607624 649 ntBASIC23■■□□□ 1.27
MSH5O43196 AC020923.1-201ENST00000624021 917 ntBASIC23■■□□□ 1.27
MSH5O43196 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH5O43196 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC23■■□□□ 1.27
MSH5O43196 AC068418.2-201ENST00000577309 3703 ntBASIC23■■□□□ 1.27
MSH5O43196 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC23■■□□□ 1.27
MSH5O43196 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH5O43196 AC093677.2-201ENST00000600169 1863 ntBASIC23■■□□□ 1.27
MSH5O43196 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC23■■□□□ 1.27
MSH5O43196 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH5O43196 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
MSH5O43196 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC23■■□□□ 1.27
MSH5O43196 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC23■■□□□ 1.27
MSH5O43196 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
MSH5O43196 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH5O43196 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 SYS1-203ENST00000414310 795 ntTSL 3 BASIC22.99■■□□□ 1.27
MSH5O43196 AC003075.1-208ENST00000415246 596 ntTSL 3 BASIC22.99■■□□□ 1.27
MSH5O43196 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC22.99■■□□□ 1.27
MSH5O43196 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC22.99■■□□□ 1.27
MSH5O43196 AL645939.2-201ENST00000427340 991 ntBASIC22.99■■□□□ 1.27
MSH5O43196 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 RPL22L1-202ENST00000463836 506 ntAPPRIS ALT1 TSL 2 BASIC22.99■■□□□ 1.27
MSH5O43196 AC109464.1-201ENST00000511091 819 ntBASIC22.99■■□□□ 1.27
MSH5O43196 AP002852.2-201ENST00000519630 740 ntTSL 5 BASIC22.99■■□□□ 1.27
MSH5O43196 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH5O43196 SNRPGP1-201ENST00000553864 222 ntBASIC22.99■■□□□ 1.27
MSH5O43196 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC22.99■■□□□ 1.27
MSH5O43196 AC016839.1-201ENST00000578162 867 ntBASIC22.99■■□□□ 1.27
MSH5O43196 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH5O43196 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH5O43196 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC22.99■■□□□ 1.27
MSH5O43196 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH5O43196 MIR1199-201ENST00000621445 119 ntBASIC22.99■■□□□ 1.27
MSH5O43196 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH5O43196 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC22.99■■□□□ 1.27
MSH5O43196 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC22.99■■□□□ 1.27
MSH5O43196 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH5O43196 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH5O43196 AL499627.1-201ENST00000569373 2188 ntBASIC22.99■■□□□ 1.27
MSH5O43196 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC22.98■■□□□ 1.27
MSH5O43196 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC22.98■■□□□ 1.27
MSH5O43196 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC22.98■■□□□ 1.27
MSH5O43196 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC22.98■■□□□ 1.27
MSH5O43196 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC22.98■■□□□ 1.27
MSH5O43196 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
MSH5O43196 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC22.98■■□□□ 1.27
MSH5O43196 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC22.98■■□□□ 1.27
MSH5O43196 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC22.98■■□□□ 1.27
MSH5O43196 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC22.98■■□□□ 1.27
MSH5O43196 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC22.98■■□□□ 1.27
MSH5O43196 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC22.98■■□□□ 1.27
MSH5O43196 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC22.98■■□□□ 1.27
MSH5O43196 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC22.98■■□□□ 1.27
MSH5O43196 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC22.98■■□□□ 1.27
MSH5O43196 MIR4435-2HG-219ENST00000609220 883 ntTSL 3 BASIC22.98■■□□□ 1.27
MSH5O43196 AC009154.2-201ENST00000621177 724 ntBASIC22.98■■□□□ 1.27
MSH5O43196 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
MSH5O43196 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC22.98■■□□□ 1.27
MSH5O43196 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC22.98■■□□□ 1.27
MSH5O43196 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 MTCO1P6-201ENST00000481192 1384 ntBASIC22.98■■□□□ 1.27
MSH5O43196 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH5O43196 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC22.98■■□□□ 1.27
MSH5O43196 FLYWCH1P1-201ENST00000460917 1874 ntBASIC22.98■■□□□ 1.27
MSH5O43196 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms