Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 FAM185BP-201ENST00000443595 716 ntBASIC19.54■□□□□ 0.72
LIMCH1Q9UPQ0 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.54■□□□□ 0.72
LIMCH1Q9UPQ0 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMCH1Q9UPQ0 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.54■□□□□ 0.72
LIMCH1Q9UPQ0 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.54■□□□□ 0.72
LIMCH1Q9UPQ0 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMCH1Q9UPQ0 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMCH1Q9UPQ0 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.54■□□□□ 0.72
LIMCH1Q9UPQ0 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMCH1Q9UPQ0 ACTL9-202ENST00000612068 1252 ntBASIC19.54■□□□□ 0.72
LIMCH1Q9UPQ0 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMCH1Q9UPQ0 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
LIMCH1Q9UPQ0 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMCH1Q9UPQ0 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
LIMCH1Q9UPQ0 AC010491.1-201ENST00000563101 2797 ntBASIC19.54■□□□□ 0.72
LIMCH1Q9UPQ0 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 AC105917.1-201ENST00000506637 2539 ntBASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
LIMCH1Q9UPQ0 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 MIR4515-201ENST00000584082 81 ntBASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 FAM215A-202ENST00000632077 792 ntBASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
LIMCH1Q9UPQ0 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
LIMCH1Q9UPQ0 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
LIMCH1Q9UPQ0 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.52■□□□□ 0.71
LIMCH1Q9UPQ0 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
LIMCH1Q9UPQ0 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
LIMCH1Q9UPQ0 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
LIMCH1Q9UPQ0 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.71
LIMCH1Q9UPQ0 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
LIMCH1Q9UPQ0 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.71
LIMCH1Q9UPQ0 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 MTRF1LP2-201ENST00000506027 1122 ntBASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 AL691432.3-201ENST00000621860 400 ntBASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 AC117500.6-201ENST00000624871 588 ntBASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LIMCH1Q9UPQ0 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms