Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 AC015922.1-201ENST00000421102 1152 ntBASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 TEX28P1-201ENST00000613479 1221 ntBASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 TEX28P2-201ENST00000617764 1221 ntBASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.58■□□□□ 0.4
PAAF1Q9BRP4 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 AL035456.1-201ENST00000456064 1369 ntBASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 FAM207CP-201ENST00000443486 507 ntBASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 AL589739.1-201ENST00000607720 493 ntBASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 AC022144.1-201ENST00000602255 1580 ntBASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.57■□□□□ 0.4
PAAF1Q9BRP4 HLA-A-202ENST00000376806 1854 ntBASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 AC092171.3-201ENST00000610122 2651 ntBASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 AC061975.2-201ENST00000581722 295 ntBASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PAAF1Q9BRP4 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms