Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 GCK-209ENST00000616242 2260 ntTSL 5 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 REM2-202ENST00000536884 1331 ntTSL 2 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 CYP2T1P-202ENST00000641596 2535 ntBASIC12.83□□□□□ -0.36
CCDC140Q96MF4 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 DOC2GP-204ENST00000639052 2548 ntBASIC12.82□□□□□ -0.36
CCDC140Q96MF4 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 AC023274.1-201ENST00000418278 595 ntBASIC12.82□□□□□ -0.36
CCDC140Q96MF4 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 NMU-202ENST00000505262 693 ntTSL 3 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 POLD2P1-201ENST00000511220 997 ntBASIC12.82□□□□□ -0.36
CCDC140Q96MF4 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 WDR88-203ENST00000592765 651 ntTSL 5 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC140Q96MF4 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC12.81□□□□□ -0.36
CCDC140Q96MF4 AC092474.2-201ENST00000424288 719 ntBASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms