Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 AL671710.1-201ENST00000610245 2349 ntBASIC12.47□□□□□ -0.41
LINC00477Q96M19 PTCHD3P3-201ENST00000403073 906 ntBASIC12.47□□□□□ -0.41
LINC00477Q96M19 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 AC006557.2-201ENST00000592985 1240 ntBASIC12.47□□□□□ -0.41
LINC00477Q96M19 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 GGTLC5P-201ENST00000617623 998 ntBASIC12.47□□□□□ -0.41
LINC00477Q96M19 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 REXO1L3P-201ENST00000622202 1288 ntBASIC12.47□□□□□ -0.41
LINC00477Q96M19 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 SNX33P1-201ENST00000592116 1762 ntBASIC12.47□□□□□ -0.41
LINC00477Q96M19 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LINC00477Q96M19 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
LINC00477Q96M19 AL353732.1-201ENST00000569618 1459 ntBASIC12.46□□□□□ -0.41
LINC00477Q96M19 PC-214ENST00000628663 1470 ntTSL 5 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00477Q96M19 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00477Q96M19 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00477Q96M19 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00477Q96M19 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00477Q96M19 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00477Q96M19 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00477Q96M19 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00477Q96M19 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00477Q96M19 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00477Q96M19 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00477Q96M19 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00477Q96M19 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00477Q96M19 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
LINC00477Q96M19 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 LSM5-204ENST00000409909 740 ntTSL 2 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 RNF146-204ENST00000476956 884 ntTSL 2 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 KRT18P35-201ENST00000510488 1269 ntBASIC12.46□□□□□ -0.41
LINC00477Q96M19 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 IRF8-202ENST00000562492 946 ntTSL 3 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 RNF151-202ENST00000569210 853 ntTSL 2 BASIC12.46□□□□□ -0.41
LINC00477Q96M19 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms