Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CD63-210ENST00000550776 870 ntTSL 5 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 AC087641.1-201ENST00000557561 1021 ntBASIC14.73□□□□□ -0.05
SKA3Q8IX90 AC096734.2-201ENST00000562054 433 ntBASIC14.73□□□□□ -0.05
SKA3Q8IX90 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 CAND2-206ENST00000626378 333 ntTSL 5 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 AC010507.1-201ENST00000633895 436 ntBASIC14.73□□□□□ -0.05
SKA3Q8IX90 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SKA3Q8IX90 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SKA3Q8IX90 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SKA3Q8IX90 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SKA3Q8IX90 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SKA3Q8IX90 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SKA3Q8IX90 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SKA3Q8IX90 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SKA3Q8IX90 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 AL022342.1-201ENST00000400363 863 ntBASIC14.72□□□□□ -0.05
SKA3Q8IX90 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 HCG4-201ENST00000418983 998 ntBASIC14.72□□□□□ -0.05
SKA3Q8IX90 RHOQP3-201ENST00000437982 621 ntBASIC14.72□□□□□ -0.05
SKA3Q8IX90 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 HS6ST1P1-201ENST00000481504 1234 ntBASIC14.72□□□□□ -0.05
SKA3Q8IX90 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 AC018845.2-201ENST00000568326 409 ntBASIC14.72□□□□□ -0.05
SKA3Q8IX90 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SKA3Q8IX90 MIR4515-201ENST00000584082 81 ntBASIC14.72□□□□□ -0.05
SKA3Q8IX90 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 CYP2A7P1-201ENST00000595391 815 ntBASIC14.72□□□□□ -0.05
SKA3Q8IX90 AC140113.2-201ENST00000604370 208 ntBASIC14.72□□□□□ -0.05
SKA3Q8IX90 AC027601.4-201ENST00000611259 610 ntBASIC14.72□□□□□ -0.05
SKA3Q8IX90 WT1-AS_2.1-201ENST00000613208 137 ntBASIC14.72□□□□□ -0.05
SKA3Q8IX90 AP001350.2-201ENST00000625104 1094 ntBASIC14.72□□□□□ -0.05
SKA3Q8IX90 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SKA3Q8IX90 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SKA3Q8IX90 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 AC092171.3-201ENST00000610122 2651 ntBASIC14.72□□□□□ -0.05
SKA3Q8IX90 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SKA3Q8IX90 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SKA3Q8IX90 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 AL136379.1-201ENST00000623471 2642 ntBASIC14.72□□□□□ -0.05
SKA3Q8IX90 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SKA3Q8IX90 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SKA3Q8IX90 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 AMT-206ENST00000458307 1860 ntTSL 2 BASIC14.72□□□□□ -0.05
SKA3Q8IX90 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 AC012569.1-201ENST00000591191 1524 ntBASIC14.71□□□□□ -0.05
SKA3Q8IX90 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 AL671710.1-201ENST00000610245 2349 ntBASIC14.71□□□□□ -0.05
SKA3Q8IX90 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 BEX3-201ENST00000361298 921 ntTSL 2 BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms