Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
KRT39Q6A163 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
KRT39Q6A163 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
KRT39Q6A163 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
KRT39Q6A163 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.89■□□□□ 0.45
KRT39Q6A163 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
KRT39Q6A163 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.89■□□□□ 0.45
KRT39Q6A163 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
KRT39Q6A163 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.89■□□□□ 0.45
KRT39Q6A163 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
KRT39Q6A163 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.89■□□□□ 0.45
KRT39Q6A163 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.89■□□□□ 0.45
KRT39Q6A163 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.89■□□□□ 0.45
KRT39Q6A163 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.89■□□□□ 0.45
KRT39Q6A163 AL671883.3-201ENST00000603274 991 ntBASIC17.89■□□□□ 0.45
KRT39Q6A163 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.89■□□□□ 0.45
KRT39Q6A163 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.89■□□□□ 0.45
KRT39Q6A163 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
KRT39Q6A163 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
KRT39Q6A163 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.89■□□□□ 0.45
KRT39Q6A163 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
KRT39Q6A163 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.89■□□□□ 0.45
KRT39Q6A163 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
KRT39Q6A163 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
KRT39Q6A163 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
KRT39Q6A163 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
KRT39Q6A163 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.89■□□□□ 0.45
KRT39Q6A163 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
KRT39Q6A163 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
KRT39Q6A163 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
KRT39Q6A163 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.88■□□□□ 0.45
KRT39Q6A163 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
KRT39Q6A163 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.88■□□□□ 0.45
KRT39Q6A163 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
KRT39Q6A163 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
KRT39Q6A163 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
KRT39Q6A163 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
KRT39Q6A163 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
KRT39Q6A163 AC002056.1-201ENST00000395613 760 ntBASIC17.88■□□□□ 0.45
KRT39Q6A163 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
KRT39Q6A163 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.88■□□□□ 0.45
KRT39Q6A163 AC112191.1-201ENST00000523689 701 ntBASIC17.88■□□□□ 0.45
KRT39Q6A163 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
KRT39Q6A163 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.88■□□□□ 0.45
KRT39Q6A163 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
KRT39Q6A163 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
KRT39Q6A163 AL161645.1-201ENST00000622716 1255 ntBASIC17.88■□□□□ 0.45
KRT39Q6A163 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
KRT39Q6A163 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
KRT39Q6A163 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
KRT39Q6A163 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
KRT39Q6A163 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.88■□□□□ 0.45
KRT39Q6A163 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.88■□□□□ 0.45
KRT39Q6A163 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
KRT39Q6A163 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
KRT39Q6A163 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
KRT39Q6A163 CYP2T1P-202ENST00000641596 2535 ntBASIC17.88■□□□□ 0.45
KRT39Q6A163 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.88■□□□□ 0.45
KRT39Q6A163 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 PCDH8P1-201ENST00000428983 2773 ntBASIC17.87■□□□□ 0.45
KRT39Q6A163 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.87■□□□□ 0.45
KRT39Q6A163 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.87■□□□□ 0.45
KRT39Q6A163 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
KRT39Q6A163 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.87■□□□□ 0.45
KRT39Q6A163 AP000347.1-202ENST00000435868 847 ntBASIC17.87■□□□□ 0.45
KRT39Q6A163 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.87■□□□□ 0.45
KRT39Q6A163 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
KRT39Q6A163 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.87■□□□□ 0.45
KRT39Q6A163 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.87■□□□□ 0.45
KRT39Q6A163 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.87■□□□□ 0.45
KRT39Q6A163 AC002347.1-201ENST00000569543 541 ntBASIC17.87■□□□□ 0.45
KRT39Q6A163 AL078644.1-201ENST00000609881 752 ntBASIC17.87■□□□□ 0.45
KRT39Q6A163 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
KRT39Q6A163 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
KRT39Q6A163 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
KRT39Q6A163 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
KRT39Q6A163 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.87■□□□□ 0.45
KRT39Q6A163 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
KRT39Q6A163 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
KRT39Q6A163 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
KRT39Q6A163 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms