Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHD9Q3L8U1 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 AL512652.2-201ENST00000625156 1716 ntBASIC17.24■□□□□ 0.35
CHD9Q3L8U1 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 AC091271.1-201ENST00000611877 1162 ntBASIC17.24■□□□□ 0.35
CHD9Q3L8U1 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 CROCCP2-202ENST00000412962 2773 ntBASIC17.24■□□□□ 0.35
CHD9Q3L8U1 TPO-206ENST00000382269 1155 ntTSL 5 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 PFN2-215ENST00000497148 743 ntTSL 4 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 CHMP4BP1-201ENST00000556017 588 ntBASIC17.24■□□□□ 0.35
CHD9Q3L8U1 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 RN7SL560P-201ENST00000577943 264 ntBASIC17.24■□□□□ 0.35
CHD9Q3L8U1 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 AC016629.1-201ENST00000596579 586 ntBASIC17.24■□□□□ 0.35
CHD9Q3L8U1 AC244669.2-201ENST00000612320 853 ntBASIC17.24■□□□□ 0.35
CHD9Q3L8U1 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHD9Q3L8U1 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 AL442647.2-201ENST00000429864 857 ntBASIC17.23■□□□□ 0.35
CHD9Q3L8U1 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 AC010328.2-201ENST00000597698 1111 ntBASIC17.23■□□□□ 0.35
CHD9Q3L8U1 AC005695.3-201ENST00000614522 232 ntBASIC17.23■□□□□ 0.35
CHD9Q3L8U1 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 NEU3-202ENST00000526068 431 ntTSL 2 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 AC124283.3-201ENST00000570869 594 ntBASIC17.23■□□□□ 0.35
CHD9Q3L8U1 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 AC092978.1-202ENST00000637590 1327 ntBASIC17.23■□□□□ 0.35
CHD9Q3L8U1 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHD9Q3L8U1 AC135050.7-201ENST00000624508 2218 ntBASIC17.22■□□□□ 0.35
CHD9Q3L8U1 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 AP001889.1-201ENST00000525414 633 ntBASIC17.22■□□□□ 0.35
CHD9Q3L8U1 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 AC015967.2-201ENST00000624092 234 ntBASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms