Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC132938.2-201ENST00000579188 680 ntBASIC21.74■■□□□ 1.07
HOXC9P31274 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC21.74■■□□□ 1.07
HOXC9P31274 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC21.74■■□□□ 1.07
HOXC9P31274 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC21.74■■□□□ 1.07
HOXC9P31274 AC116165.1-201ENST00000611806 668 ntBASIC21.74■■□□□ 1.07
HOXC9P31274 AL591163.1-201ENST00000641757 987 ntBASIC21.74■■□□□ 1.07
HOXC9P31274 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
HOXC9P31274 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HOXC9P31274 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HOXC9P31274 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC21.74■■□□□ 1.07
HOXC9P31274 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HOXC9P31274 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HOXC9P31274 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC21.74■■□□□ 1.07
HOXC9P31274 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC9P31274 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC9P31274 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC9P31274 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
HOXC9P31274 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC9P31274 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC9P31274 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC21.73■■□□□ 1.07
HOXC9P31274 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
HOXC9P31274 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
HOXC9P31274 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC9P31274 GCK-202ENST00000345378 2421 ntTSL 2 BASIC21.73■■□□□ 1.07
HOXC9P31274 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
HOXC9P31274 AP006294.1-201ENST00000415407 339 ntBASIC21.73■■□□□ 1.07
HOXC9P31274 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC21.73■■□□□ 1.07
HOXC9P31274 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC21.73■■□□□ 1.07
HOXC9P31274 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC21.73■■□□□ 1.07
HOXC9P31274 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC9P31274 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC9P31274 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC9P31274 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC21.73■■□□□ 1.07
HOXC9P31274 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC9P31274 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC9P31274 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC21.73■■□□□ 1.07
HOXC9P31274 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
HOXC9P31274 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC9P31274 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HOXC9P31274 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC21.73■■□□□ 1.07
HOXC9P31274 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC21.73■■□□□ 1.07
HOXC9P31274 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC9P31274 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC21.72■■□□□ 1.07
HOXC9P31274 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC9P31274 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC9P31274 AC005915.1-201ENST00000624912 2018 ntBASIC21.72■■□□□ 1.07
HOXC9P31274 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
HOXC9P31274 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC9P31274 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
HOXC9P31274 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC21.72■■□□□ 1.07
HOXC9P31274 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC9P31274 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC21.72■■□□□ 1.07
HOXC9P31274 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC21.72■■□□□ 1.07
HOXC9P31274 HIST3H2BA-201ENST00000436555 524 ntBASIC21.72■■□□□ 1.07
HOXC9P31274 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
HOXC9P31274 ATP5G2P4-201ENST00000442175 420 ntBASIC21.72■■□□□ 1.07
HOXC9P31274 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC21.72■■□□□ 1.07
HOXC9P31274 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC9P31274 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC9P31274 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC9P31274 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC9P31274 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC9P31274 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC21.72■■□□□ 1.07
HOXC9P31274 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC21.72■■□□□ 1.07
HOXC9P31274 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC21.72■■□□□ 1.07
HOXC9P31274 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC9P31274 AC055876.2-201ENST00000531834 546 ntBASIC21.72■■□□□ 1.07
HOXC9P31274 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC9P31274 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC21.72■■□□□ 1.07
HOXC9P31274 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC21.72■■□□□ 1.07
HOXC9P31274 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HOXC9P31274 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC21.72■■□□□ 1.07
HOXC9P31274 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC21.72■■□□□ 1.07
HOXC9P31274 GGT3P-204ENST00000453783 1664 ntBASIC21.72■■□□□ 1.07
HOXC9P31274 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.72■■□□□ 1.07
HOXC9P31274 AL136982.4-201ENST00000437689 1740 ntBASIC21.72■■□□□ 1.07
HOXC9P31274 AC005622.1-201ENST00000636801 1703 ntBASIC21.72■■□□□ 1.07
HOXC9P31274 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC21.72■■□□□ 1.07
HOXC9P31274 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
HOXC9P31274 U82695.1-201ENST00000635752 1889 ntBASIC21.71■■□□□ 1.07
HOXC9P31274 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC21.71■■□□□ 1.07
HOXC9P31274 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HOXC9P31274 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HOXC9P31274 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC21.71■■□□□ 1.07
HOXC9P31274 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HOXC9P31274 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
HOXC9P31274 AL512384.1-201ENST00000406683 331 ntBASIC21.71■■□□□ 1.07
HOXC9P31274 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC21.71■■□□□ 1.07
HOXC9P31274 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC21.71■■□□□ 1.07
HOXC9P31274 RN7SL752P-201ENST00000463779 287 ntBASIC21.71■■□□□ 1.07
HOXC9P31274 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC21.71■■□□□ 1.07
HOXC9P31274 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC21.71■■□□□ 1.07
HOXC9P31274 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC21.71■■□□□ 1.07
HOXC9P31274 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC21.71■■□□□ 1.07
HOXC9P31274 MIR6069-201ENST00000620069 79 ntBASIC21.71■■□□□ 1.07
HOXC9P31274 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HOXC9P31274 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HOXC9P31274 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
HOXC9P31274 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC21.71■■□□□ 1.07
HOXC9P31274 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms