Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC14.44□□□□□ -0.1
COL8A1P27658 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 HLA-H-201ENST00000383620 1096 ntBASIC14.44□□□□□ -0.1
COL8A1P27658 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.44□□□□□ -0.1
COL8A1P27658 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.44□□□□□ -0.1
COL8A1P27658 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC14.44□□□□□ -0.1
COL8A1P27658 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC14.44□□□□□ -0.1
COL8A1P27658 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.44□□□□□ -0.1
COL8A1P27658 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.44□□□□□ -0.1
COL8A1P27658 AC055876.2-201ENST00000531834 546 ntBASIC14.44□□□□□ -0.1
COL8A1P27658 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
COL8A1P27658 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 AL079307.3-201ENST00000556114 283 ntBASIC14.44□□□□□ -0.1
COL8A1P27658 AC105021.1-202ENST00000570572 669 ntBASIC14.44□□□□□ -0.1
COL8A1P27658 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.44□□□□□ -0.1
COL8A1P27658 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC14.44□□□□□ -0.1
COL8A1P27658 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC14.44□□□□□ -0.1
COL8A1P27658 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC14.44□□□□□ -0.1
COL8A1P27658 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC14.44□□□□□ -0.1
COL8A1P27658 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
COL8A1P27658 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC14.44□□□□□ -0.1
COL8A1P27658 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC14.44□□□□□ -0.1
COL8A1P27658 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL8A1P27658 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
COL8A1P27658 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC14.43□□□□□ -0.1
COL8A1P27658 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC14.43□□□□□ -0.1
COL8A1P27658 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC14.43□□□□□ -0.1
COL8A1P27658 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
COL8A1P27658 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC14.43□□□□□ -0.1
COL8A1P27658 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
COL8A1P27658 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC14.43□□□□□ -0.1
COL8A1P27658 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.43□□□□□ -0.1
COL8A1P27658 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
COL8A1P27658 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 AL080243.2-201ENST00000418783 582 ntBASIC14.43□□□□□ -0.1
COL8A1P27658 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC14.43□□□□□ -0.1
COL8A1P27658 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
COL8A1P27658 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC14.43□□□□□ -0.1
COL8A1P27658 RN7SL618P-201ENST00000477850 296 ntBASIC14.43□□□□□ -0.1
COL8A1P27658 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.43□□□□□ -0.1
COL8A1P27658 TPRX2P-201ENST00000535362 881 ntBASIC14.43□□□□□ -0.1
COL8A1P27658 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
COL8A1P27658 BANF1P1-201ENST00000553684 263 ntBASIC14.43□□□□□ -0.1
COL8A1P27658 AL512361.1-201ENST00000554200 418 ntBASIC14.43□□□□□ -0.1
COL8A1P27658 AC023310.3-201ENST00000557027 670 ntBASIC14.43□□□□□ -0.1
COL8A1P27658 AC100756.1-201ENST00000562736 682 ntBASIC14.43□□□□□ -0.1
COL8A1P27658 AC138749.3-201ENST00000567691 622 ntBASIC14.43□□□□□ -0.1
COL8A1P27658 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.43□□□□□ -0.1
COL8A1P27658 ARL16-210ENST00000574938 751 ntTSL 2 BASIC14.43□□□□□ -0.1
COL8A1P27658 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms