Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL5A3P25940 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.51■□□□□ 0.87
COL5A3P25940 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A3P25940 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC20.5■□□□□ 0.87
COL5A3P25940 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
COL5A3P25940 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A3P25940 TARDBPP1-201ENST00000442013 1203 ntBASIC20.5■□□□□ 0.87
COL5A3P25940 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC20.5■□□□□ 0.87
COL5A3P25940 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC20.5■□□□□ 0.87
COL5A3P25940 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC20.5■□□□□ 0.87
COL5A3P25940 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC20.5■□□□□ 0.87
COL5A3P25940 AL049840.4-201ENST00000602422 811 ntBASIC20.5■□□□□ 0.87
COL5A3P25940 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A3P25940 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
COL5A3P25940 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A3P25940 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
COL5A3P25940 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
COL5A3P25940 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A3P25940 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC20.5■□□□□ 0.87
COL5A3P25940 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A3P25940 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A3P25940 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A3P25940 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC20.5■□□□□ 0.87
COL5A3P25940 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
COL5A3P25940 LBX2-201ENST00000341396 886 ntTSL 3 BASIC20.5■□□□□ 0.87
COL5A3P25940 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC20.5■□□□□ 0.87
COL5A3P25940 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A3P25940 AC074338.1-201ENST00000416825 156 ntBASIC20.5■□□□□ 0.87
COL5A3P25940 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A3P25940 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC20.5■□□□□ 0.87
COL5A3P25940 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC20.5■□□□□ 0.87
COL5A3P25940 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A3P25940 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A3P25940 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC20.5■□□□□ 0.87
COL5A3P25940 CU634019.7-201ENST00000624153 1185 ntBASIC20.5■□□□□ 0.87
COL5A3P25940 FP236241.2-201ENST00000624906 1185 ntBASIC20.5■□□□□ 0.87
COL5A3P25940 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A3P25940 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC20.49■□□□□ 0.87
COL5A3P25940 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.49■□□□□ 0.87
COL5A3P25940 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC20.49■□□□□ 0.87
COL5A3P25940 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A3P25940 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
COL5A3P25940 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC20.49■□□□□ 0.87
COL5A3P25940 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC20.49■□□□□ 0.87
COL5A3P25940 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A3P25940 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A3P25940 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.49■□□□□ 0.87
COL5A3P25940 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC20.49■□□□□ 0.87
COL5A3P25940 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
COL5A3P25940 STX1A-203ENST00000395155 783 ntTSL 2 BASIC20.49■□□□□ 0.87
COL5A3P25940 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC20.49■□□□□ 0.87
COL5A3P25940 KRT43P-201ENST00000434019 910 ntBASIC20.49■□□□□ 0.87
COL5A3P25940 FTH1P14-201ENST00000482930 551 ntBASIC20.49■□□□□ 0.87
COL5A3P25940 AC104596.2-201ENST00000512793 793 ntBASIC20.49■□□□□ 0.87
COL5A3P25940 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC20.49■□□□□ 0.87
COL5A3P25940 FAM8A2P-201ENST00000528813 1142 ntBASIC20.49■□□□□ 0.87
COL5A3P25940 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A3P25940 AL583810.1-201ENST00000553344 1045 ntBASIC20.49■□□□□ 0.87
COL5A3P25940 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC20.49■□□□□ 0.87
COL5A3P25940 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC20.49■□□□□ 0.87
COL5A3P25940 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC20.49■□□□□ 0.87
COL5A3P25940 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC20.49■□□□□ 0.87
COL5A3P25940 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A3P25940 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A3P25940 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A3P25940 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A3P25940 AC006538.1-201ENST00000567905 1585 ntBASIC20.49■□□□□ 0.87
COL5A3P25940 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.49■□□□□ 0.87
COL5A3P25940 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A3P25940 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL5A3P25940 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL5A3P25940 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC20.48■□□□□ 0.87
COL5A3P25940 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
COL5A3P25940 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
COL5A3P25940 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL5A3P25940 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC20.48■□□□□ 0.87
COL5A3P25940 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.48■□□□□ 0.87
COL5A3P25940 AC108725.1-201ENST00000495472 409 ntBASIC20.48■□□□□ 0.87
COL5A3P25940 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC20.48■□□□□ 0.87
COL5A3P25940 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC20.48■□□□□ 0.87
COL5A3P25940 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC20.48■□□□□ 0.87
COL5A3P25940 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL5A3P25940 AL133338.1-201ENST00000565695 1517 ntBASIC20.48■□□□□ 0.87
COL5A3P25940 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL5A3P25940 KRT8P44-201ENST00000441609 1350 ntBASIC20.48■□□□□ 0.87
COL5A3P25940 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL5A3P25940 HLA-A-202ENST00000376806 1854 ntBASIC20.48■□□□□ 0.87
COL5A3P25940 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.48■□□□□ 0.87
COL5A3P25940 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL5A3P25940 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
COL5A3P25940 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC20.47■□□□□ 0.87
COL5A3P25940 KRT8P37-201ENST00000451609 1420 ntBASIC20.47■□□□□ 0.87
COL5A3P25940 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A3P25940 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A3P25940 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A3P25940 PKIG-203ENST00000372887 769 ntTSL 3 BASIC20.47■□□□□ 0.87
COL5A3P25940 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A3P25940 RPL28-203ENST00000428193 573 ntTSL 2 BASIC20.47■□□□□ 0.87
COL5A3P25940 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC20.47■□□□□ 0.87
COL5A3P25940 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms