Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1FO60840 AL139010.1-201ENST00000454878 894 ntBASIC20.6■□□□□ 0.89
CACNA1FO60840 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1FO60840 MPI-209ENST00000564003 1195 ntTSL 2 BASIC20.6■□□□□ 0.89
CACNA1FO60840 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1FO60840 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1FO60840 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC20.6■□□□□ 0.89
CACNA1FO60840 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC20.6■□□□□ 0.89
CACNA1FO60840 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1FO60840 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1FO60840 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC20.59■□□□□ 0.89
CACNA1FO60840 PCDHA14-201ENST00000506751 2298 ntBASIC20.59■□□□□ 0.89
CACNA1FO60840 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1FO60840 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1FO60840 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC20.59■□□□□ 0.89
CACNA1FO60840 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC20.59■□□□□ 0.89
CACNA1FO60840 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1FO60840 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC20.59■□□□□ 0.89
CACNA1FO60840 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1FO60840 AP001282.1-201ENST00000531301 1499 ntBASIC20.59■□□□□ 0.89
CACNA1FO60840 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC20.59■□□□□ 0.89
CACNA1FO60840 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CACNA1FO60840 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC20.59■□□□□ 0.89
CACNA1FO60840 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1FO60840 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CACNA1FO60840 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1FO60840 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CACNA1FO60840 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1FO60840 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1FO60840 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC20.59■□□□□ 0.89
CACNA1FO60840 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC20.59■□□□□ 0.89
CACNA1FO60840 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CACNA1FO60840 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
CACNA1FO60840 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1FO60840 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1FO60840 IMPDH1P4-201ENST00000445028 1534 ntBASIC20.59■□□□□ 0.89
CACNA1FO60840 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CACNA1FO60840 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CACNA1FO60840 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CACNA1FO60840 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CACNA1FO60840 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC20.58■□□□□ 0.89
CACNA1FO60840 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CACNA1FO60840 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CACNA1FO60840 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CACNA1FO60840 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC20.58■□□□□ 0.89
CACNA1FO60840 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CACNA1FO60840 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CACNA1FO60840 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CACNA1FO60840 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CACNA1FO60840 AC022144.1-201ENST00000602255 1580 ntBASIC20.58■□□□□ 0.89
CACNA1FO60840 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC20.58■□□□□ 0.89
CACNA1FO60840 AC006449.5-201ENST00000610658 2098 ntBASIC20.58■□□□□ 0.88
CACNA1FO60840 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CACNA1FO60840 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CACNA1FO60840 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CACNA1FO60840 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CACNA1FO60840 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CACNA1FO60840 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CACNA1FO60840 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
CACNA1FO60840 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
CACNA1FO60840 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CACNA1FO60840 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
CACNA1FO60840 GCK-209ENST00000616242 2260 ntTSL 5 BASIC20.58■□□□□ 0.88
CACNA1FO60840 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC20.58■□□□□ 0.88
CACNA1FO60840 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CACNA1FO60840 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
CACNA1FO60840 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC20.57■□□□□ 0.88
CACNA1FO60840 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 KLK8-202ENST00000320838 456 ntTSL 5 BASIC20.57■□□□□ 0.88
CACNA1FO60840 MIR770-201ENST00000390219 98 ntBASIC20.57■□□□□ 0.88
CACNA1FO60840 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CACNA1FO60840 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 AC009477.1-201ENST00000452936 217 ntBASIC20.57■□□□□ 0.88
CACNA1FO60840 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC20.57■□□□□ 0.88
CACNA1FO60840 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC20.57■□□□□ 0.88
CACNA1FO60840 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC20.57■□□□□ 0.88
CACNA1FO60840 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC20.57■□□□□ 0.88
CACNA1FO60840 DUX4L27-201ENST00000554796 1261 ntBASIC20.57■□□□□ 0.88
CACNA1FO60840 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC20.57■□□□□ 0.88
CACNA1FO60840 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC20.57■□□□□ 0.88
CACNA1FO60840 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC20.57■□□□□ 0.88
CACNA1FO60840 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC20.57■□□□□ 0.88
CACNA1FO60840 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC20.57■□□□□ 0.88
CACNA1FO60840 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC20.57■□□□□ 0.88
CACNA1FO60840 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC20.57■□□□□ 0.88
CACNA1FO60840 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.57■□□□□ 0.88
CACNA1FO60840 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC20.57■□□□□ 0.88
CACNA1FO60840 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC20.57■□□□□ 0.88
CACNA1FO60840 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC20.57■□□□□ 0.88
CACNA1FO60840 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC20.57■□□□□ 0.88
CACNA1FO60840 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms