Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXC11O43248 TEX28P1-201ENST00000613479 1221 ntBASIC16.81■□□□□ 0.28
HOXC11O43248 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.81■□□□□ 0.28
HOXC11O43248 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.81■□□□□ 0.28
HOXC11O43248 TEX28P2-201ENST00000617764 1221 ntBASIC16.81■□□□□ 0.28
HOXC11O43248 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
HOXC11O43248 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXC11O43248 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXC11O43248 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HOXC11O43248 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
HOXC11O43248 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
HOXC11O43248 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
HOXC11O43248 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXC11O43248 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.8■□□□□ 0.28
HOXC11O43248 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
HOXC11O43248 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HOXC11O43248 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HOXC11O43248 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.8■□□□□ 0.28
HOXC11O43248 GGT4P-201ENST00000623672 1708 ntBASIC16.8■□□□□ 0.28
HOXC11O43248 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.8■□□□□ 0.28
HOXC11O43248 AC015922.1-201ENST00000421102 1152 ntBASIC16.8■□□□□ 0.28
HOXC11O43248 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.8■□□□□ 0.28
HOXC11O43248 MTND6P24-201ENST00000440466 518 ntBASIC16.8■□□□□ 0.28
HOXC11O43248 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.8■□□□□ 0.28
HOXC11O43248 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.8■□□□□ 0.28
HOXC11O43248 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.8■□□□□ 0.28
HOXC11O43248 AL589739.1-201ENST00000607720 493 ntBASIC16.8■□□□□ 0.28
HOXC11O43248 AL133215.2-201ENST00000609242 977 ntBASIC16.8■□□□□ 0.28
HOXC11O43248 AC009118.2-201ENST00000613275 655 ntBASIC16.8■□□□□ 0.28
HOXC11O43248 AF228730.6-201ENST00000641497 218 ntBASIC16.8■□□□□ 0.28
HOXC11O43248 AC084121.3-201ENST00000641716 218 ntBASIC16.8■□□□□ 0.28
HOXC11O43248 AC105233.6-201ENST00000642093 218 ntBASIC16.8■□□□□ 0.28
HOXC11O43248 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.8■□□□□ 0.28
HOXC11O43248 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 AC006538.1-201ENST00000567905 1585 ntBASIC16.8■□□□□ 0.28
HOXC11O43248 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 AL589702.1-201ENST00000641229 1509 ntBASIC16.8■□□□□ 0.28
HOXC11O43248 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.8■□□□□ 0.28
HOXC11O43248 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
HOXC11O43248 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC11O43248 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.79■□□□□ 0.28
HOXC11O43248 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
HOXC11O43248 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HOXC11O43248 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HOXC11O43248 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.79■□□□□ 0.28
HOXC11O43248 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.79■□□□□ 0.28
HOXC11O43248 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.79■□□□□ 0.28
HOXC11O43248 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.79■□□□□ 0.28
HOXC11O43248 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 AC009477.1-201ENST00000452936 217 ntBASIC16.79■□□□□ 0.28
HOXC11O43248 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.79■□□□□ 0.28
HOXC11O43248 SERBP1P5-201ENST00000510079 1181 ntBASIC16.79■□□□□ 0.28
HOXC11O43248 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.79■□□□□ 0.28
HOXC11O43248 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.79■□□□□ 0.28
HOXC11O43248 AC024267.1-201ENST00000582320 895 ntBASIC16.79■□□□□ 0.28
HOXC11O43248 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.79■□□□□ 0.28
HOXC11O43248 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.79■□□□□ 0.28
HOXC11O43248 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC11O43248 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms