Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 CALY-202ENST00000368555 783 ntTSL 2 BASIC20.85■□□□□ 0.93
NPHP1O15259 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC20.85■□□□□ 0.93
NPHP1O15259 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 SPTLC1P1-201ENST00000447199 261 ntBASIC20.85■□□□□ 0.93
NPHP1O15259 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC20.85■□□□□ 0.93
NPHP1O15259 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.85■□□□□ 0.93
NPHP1O15259 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC20.85■□□□□ 0.93
NPHP1O15259 AC073389.1-201ENST00000595595 795 ntBASIC20.85■□□□□ 0.93
NPHP1O15259 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 AC007541.1-201ENST00000570282 1469 ntBASIC20.85■□□□□ 0.93
NPHP1O15259 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC20.85■□□□□ 0.93
NPHP1O15259 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC20.85■□□□□ 0.93
NPHP1O15259 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.85■□□□□ 0.93
NPHP1O15259 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP1O15259 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.85■□□□□ 0.93
NPHP1O15259 AC139713.2-201ENST00000641328 2723 ntBASIC20.84■□□□□ 0.93
NPHP1O15259 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP1O15259 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC20.84■□□□□ 0.93
NPHP1O15259 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC20.84■□□□□ 0.93
NPHP1O15259 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP1O15259 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.84■□□□□ 0.93
NPHP1O15259 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP1O15259 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
NPHP1O15259 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
NPHP1O15259 SLC25A6P5-201ENST00000435663 894 ntBASIC20.84■□□□□ 0.93
NPHP1O15259 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
NPHP1O15259 TMPRSS11CP-201ENST00000453277 683 ntBASIC20.84■□□□□ 0.93
NPHP1O15259 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC20.84■□□□□ 0.93
NPHP1O15259 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC20.84■□□□□ 0.93
NPHP1O15259 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC20.84■□□□□ 0.93
NPHP1O15259 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC20.84■□□□□ 0.93
NPHP1O15259 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC20.84■□□□□ 0.93
NPHP1O15259 AL132655.2-201ENST00000596276 594 ntBASIC20.84■□□□□ 0.93
NPHP1O15259 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
NPHP1O15259 AC067852.2-201ENST00000590513 2313 ntBASIC20.84■□□□□ 0.93
NPHP1O15259 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
NPHP1O15259 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
NPHP1O15259 CU639417.3-201ENST00000624240 1404 ntBASIC20.84■□□□□ 0.93
NPHP1O15259 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP1O15259 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
NPHP1O15259 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC20.84■□□□□ 0.93
NPHP1O15259 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP1O15259 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP1O15259 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP1O15259 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP1O15259 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP1O15259 LINC00895-201ENST00000629028 1637 ntBASIC20.83■□□□□ 0.93
NPHP1O15259 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
NPHP1O15259 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP1O15259 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP1O15259 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP1O15259 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP1O15259 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
NPHP1O15259 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
NPHP1O15259 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP1O15259 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
NPHP1O15259 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC20.83■□□□□ 0.93
NPHP1O15259 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP1O15259 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP1O15259 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP1O15259 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC20.83■□□□□ 0.93
NPHP1O15259 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP1O15259 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC20.83■□□□□ 0.93
NPHP1O15259 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC20.83■□□□□ 0.93
NPHP1O15259 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP1O15259 AL354751.1-201ENST00000412768 1863 ntBASIC20.83■□□□□ 0.92
NPHP1O15259 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.83■□□□□ 0.92
NPHP1O15259 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP1O15259 FRMD8P1-201ENST00000440433 1524 ntBASIC20.83■□□□□ 0.92
NPHP1O15259 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP1O15259 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
NPHP1O15259 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
NPHP1O15259 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP1O15259 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP1O15259 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP1O15259 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC20.82■□□□□ 0.92
NPHP1O15259 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP1O15259 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP1O15259 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
NPHP1O15259 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
NPHP1O15259 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.82■□□□□ 0.92
NPHP1O15259 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
NPHP1O15259 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP1O15259 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
NPHP1O15259 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP1O15259 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NPHP1O15259 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
NPHP1O15259 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms