Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 AL355306.1-201ENST00000415580 579 ntBASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 AL096865.1-201ENST00000606796 927 ntBASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 AC009093.7-201ENST00000623853 1223 ntBASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 LINC00628-201ENST00000628516 1289 ntBASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
PCDHGA3Q9Y5H0 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
PCDHGA3Q9Y5H0 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PCDHGA3Q9Y5H0 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
PCDHGA3Q9Y5H0 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.21■□□□□ 0.18
PCDHGA3Q9Y5H0 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
PCDHGA3Q9Y5H0 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 AL627223.1-201ENST00000416693 442 ntBASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 AL671277.1-201ENST00000429656 993 ntBASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 AC093512.1-201ENST00000617969 520 ntBASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDHGA3Q9Y5H0 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 AC106886.4-201ENST00000623557 2502 ntBASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 AC008741.2-201ENST00000612792 3115 ntBASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.19■□□□□ 0.18
PCDHGA3Q9Y5H0 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms