Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 AC126755.1-201ENST00000525846 6405 ntBASIC15.02■□□□□ -0
HIF3AQ9Y2N7 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 KRT18P67-201ENST00000432816 1264 ntBASIC15.02■□□□□ -0
HIF3AQ9Y2N7 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 AF186996.4-201ENST00000467186 377 ntBASIC15.02■□□□□ -0
HIF3AQ9Y2N7 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.02■□□□□ -0
HIF3AQ9Y2N7 GPAA1P2-202ENST00000606848 1787 ntBASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
HIF3AQ9Y2N7 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 RPS2P28-201ENST00000314255 741 ntBASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 AC005593.1-201ENST00000624894 515 ntBASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.01□□□□□ -0.01
HIF3AQ9Y2N7 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms