Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 HLA-J-203ENST00000494367 1087 ntBASIC17.69■□□□□ 0.42
SIX4Q9UIU6 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX4Q9UIU6 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.68■□□□□ 0.42
SIX4Q9UIU6 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 METTL21AP1-201ENST00000438852 635 ntBASIC17.68■□□□□ 0.42
SIX4Q9UIU6 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SIX4Q9UIU6 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 AC005622.1-201ENST00000636801 1703 ntBASIC17.67■□□□□ 0.42
SIX4Q9UIU6 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 SPDYE14P-201ENST00000442619 822 ntBASIC17.67■□□□□ 0.42
SIX4Q9UIU6 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.67■□□□□ 0.42
SIX4Q9UIU6 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SIX4Q9UIU6 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX4Q9UIU6 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX4Q9UIU6 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX4Q9UIU6 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX4Q9UIU6 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.66■□□□□ 0.42
SIX4Q9UIU6 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
SIX4Q9UIU6 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SIX4Q9UIU6 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SIX4Q9UIU6 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SIX4Q9UIU6 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX4Q9UIU6 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX4Q9UIU6 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX4Q9UIU6 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX4Q9UIU6 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms