Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 RCN1P2-201ENST00000398357 915 ntBASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 AL353135.1-201ENST00000606729 504 ntBASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 AL590326.2-201ENST00000625139 305 ntBASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
CCDC28BQ9BUN5 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
CCDC28BQ9BUN5 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 AC104076.2-201ENST00000448912 469 ntBASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 AC022616.7-201ENST00000525383 220 ntBASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 MIR4492-201ENST00000581627 80 ntBASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 BNIP3P18-201ENST00000593976 575 ntBASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 AC233702.3-201ENST00000578656 1387 ntBASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
CCDC28BQ9BUN5 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 BX276092.5-203ENST00000456199 560 ntBASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 MINOS1P3-201ENST00000457048 203 ntBASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 AC096582.2-201ENST00000510860 516 ntBASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 Z69720.1-201ENST00000601483 472 ntBASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 AL121672.3-201ENST00000608644 468 ntBASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CCDC28BQ9BUN5 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms