Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 ADH5P3-201ENST00000433842 1137 ntBASIC16.5■□□□□ 0.23
VPS35Q96QK1 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.5■□□□□ 0.23
VPS35Q96QK1 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 HLA-A-202ENST00000376806 1854 ntBASIC16.5■□□□□ 0.23
VPS35Q96QK1 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS35Q96QK1 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS35Q96QK1 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 AL355306.1-201ENST00000415580 579 ntBASIC16.49■□□□□ 0.23
VPS35Q96QK1 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 FAM86C2P-203ENST00000528684 1004 ntBASIC16.49■□□□□ 0.23
VPS35Q96QK1 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 RARRES2P8-201ENST00000566335 367 ntBASIC16.49■□□□□ 0.23
VPS35Q96QK1 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 NKILA-202ENST00000614771 2598 ntBASIC16.49■□□□□ 0.23
VPS35Q96QK1 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS35Q96QK1 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.49■□□□□ 0.23
VPS35Q96QK1 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS35Q96QK1 AKAP8P1-201ENST00000434743 1349 ntBASIC16.48■□□□□ 0.23
VPS35Q96QK1 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS35Q96QK1 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms