Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 CALY-202ENST00000368555 783 ntTSL 2 BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 FAM220BP-201ENST00000377689 816 ntBASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 AC025048.6-201ENST00000634326 1161 ntBASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 TUBB8P12-201ENST00000308911 1335 ntBASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 TUBB7P-202ENST00000428444 1305 ntBASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 TUBB8P7-204ENST00000567960 1332 ntBASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 PCDHA12-202ENST00000613593 2588 ntBASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC18.79■□□□□ 0.6
SYNGAP1Q96PV0 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 AL353705.2-201ENST00000428243 662 ntBASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 CR383656.12-201ENST00000549567 513 ntBASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 AL662799.1-202ENST00000614205 422 ntBASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 AP001094.4-201ENST00000579008 2176 ntBASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNGAP1Q96PV0 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 SPTLC1P1-201ENST00000447199 261 ntBASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 AC009477.1-201ENST00000452936 217 ntBASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
SYNGAP1Q96PV0 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SYNGAP1Q96PV0 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SYNGAP1Q96PV0 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC18.77■□□□□ 0.59
SYNGAP1Q96PV0 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms