Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 AC092474.2-201ENST00000424288 719 ntBASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 AC109635.5-201ENST00000533593 962 ntBASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 MIR3909-201ENST00000579518 119 ntBASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 AC134684.3-201ENST00000641758 218 ntBASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 PCDHA14-201ENST00000506751 2298 ntBASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 AC078925.2-201ENST00000624013 1973 ntBASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 KRT8P39-201ENST00000396270 1433 ntBASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 AL603756.1-201ENST00000606511 2163 ntBASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 AC004967.1-201ENST00000453589 447 ntBASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 AC099522.2-201ENST00000607001 744 ntBASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 AC021097.1-201ENST00000607902 574 ntBASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 AC079781.4-201ENST00000641908 219 ntBASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 AL139011.1-202ENST00000642063 584 ntBASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 AC124067.4-201ENST00000519691 2379 ntBASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.66■□□□□ 0.1
PTCHD1Q96NR3 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms