Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 AC131009.4-201ENST00000624048 1740 ntBASIC12.49□□□□□ -0.41
LINC00477Q96M19 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 WDR53-204ENST00000433160 887 ntTSL 5 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 AC087163.2-201ENST00000457299 853 ntBASIC12.49□□□□□ -0.41
LINC00477Q96M19 POU5F1P6-201ENST00000466990 990 ntBASIC12.49□□□□□ -0.41
LINC00477Q96M19 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 TPM1-226ENST00000560959 925 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 MIR3652-201ENST00000579335 131 ntBASIC12.49□□□□□ -0.41
LINC00477Q96M19 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 AC007326.2-201ENST00000624224 7579 ntBASIC12.49□□□□□ -0.41
LINC00477Q96M19 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
LINC00477Q96M19 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00477Q96M19 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 LINC01144-201ENST00000626198 1710 ntBASIC12.48□□□□□ -0.41
LINC00477Q96M19 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 AL513477.1-201ENST00000602865 2407 ntBASIC12.48□□□□□ -0.41
LINC00477Q96M19 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 ARMC10P1-201ENST00000313754 855 ntBASIC12.48□□□□□ -0.41
LINC00477Q96M19 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 LINC01711-201ENST00000598340 967 ntBASIC12.48□□□□□ -0.41
LINC00477Q96M19 MTDHP4-201ENST00000600287 670 ntBASIC12.48□□□□□ -0.41
LINC00477Q96M19 AC093458.2-201ENST00000623150 629 ntBASIC12.48□□□□□ -0.41
LINC00477Q96M19 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 AL512652.2-201ENST00000625156 1716 ntBASIC12.48□□□□□ -0.41
LINC00477Q96M19 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC12.48□□□□□ -0.41
LINC00477Q96M19 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00477Q96M19 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms