Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 AC064836.3-201ENST00000607928 673 ntBASIC14.75□□□□□ -0.05
SKA3Q8IX90 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 KRT18P2-201ENST00000447938 1258 ntBASIC14.74□□□□□ -0.05
SKA3Q8IX90 AL513480.1-201ENST00000451731 511 ntBASIC14.74□□□□□ -0.05
SKA3Q8IX90 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 PIN1-206ENST00000587625 878 ntTSL 2 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
SKA3Q8IX90 LINC00554-201ENST00000564841 3011 ntBASIC14.74□□□□□ -0.05
SKA3Q8IX90 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SKA3Q8IX90 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SKA3Q8IX90 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC14.73□□□□□ -0.05
SKA3Q8IX90 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms