Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13CQ709C8 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC13.62□□□□□ -0.23
VPS13CQ709C8 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
VPS13CQ709C8 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13CQ709C8 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC13.62□□□□□ -0.23
VPS13CQ709C8 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC13.62□□□□□ -0.23
VPS13CQ709C8 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.62□□□□□ -0.23
VPS13CQ709C8 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13CQ709C8 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.62□□□□□ -0.23
VPS13CQ709C8 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC13.62□□□□□ -0.23
VPS13CQ709C8 AC025048.3-201ENST00000590609 569 ntBASIC13.62□□□□□ -0.23
VPS13CQ709C8 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC13.62□□□□□ -0.23
VPS13CQ709C8 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13CQ709C8 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13CQ709C8 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13CQ709C8 RNF216P1-203ENST00000404404 2427 ntBASIC13.62□□□□□ -0.23
VPS13CQ709C8 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 BRWD1P1-201ENST00000401091 371 ntBASIC13.61□□□□□ -0.23
VPS13CQ709C8 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 RN7SL618P-201ENST00000477850 296 ntBASIC13.61□□□□□ -0.23
VPS13CQ709C8 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 KRT8P49-201ENST00000604166 1432 ntBASIC13.61□□□□□ -0.23
VPS13CQ709C8 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 AC079328.2-201ENST00000561241 3354 ntBASIC13.61□□□□□ -0.23
VPS13CQ709C8 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 AC018695.7-201ENST00000624587 2492 ntBASIC13.61□□□□□ -0.23
VPS13CQ709C8 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 PCDH8P1-201ENST00000428983 2773 ntBASIC13.61□□□□□ -0.23
VPS13CQ709C8 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 AC008764.6-201ENST00000595909 2069 ntBASIC13.61□□□□□ -0.23
VPS13CQ709C8 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 AC114501.2-201ENST00000439631 535 ntBASIC13.61□□□□□ -0.23
VPS13CQ709C8 AC108725.1-201ENST00000495472 409 ntBASIC13.61□□□□□ -0.23
VPS13CQ709C8 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 BTNL10-201ENST00000595971 695 ntBASIC13.61□□□□□ -0.23
VPS13CQ709C8 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 BANP-227ENST00000626016 2144 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13CQ709C8 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC13.61□□□□□ -0.23
VPS13CQ709C8 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13CQ709C8 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13CQ709C8 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 RPL7P3-201ENST00000441388 714 ntBASIC13.6□□□□□ -0.23
VPS13CQ709C8 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 SLC25A47P1-201ENST00000531577 414 ntBASIC13.6□□□□□ -0.23
VPS13CQ709C8 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13CQ709C8 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13CQ709C8 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13CQ709C8 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13CQ709C8 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13CQ709C8 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13CQ709C8 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13CQ709C8 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13CQ709C8 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13CQ709C8 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13CQ709C8 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13CQ709C8 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13CQ709C8 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
VPS13CQ709C8 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13CQ709C8 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms