Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC22.68■■□□□ 1.22
MSH6P52701 BCRP6-201ENST00000510112 632 ntBASIC22.68■■□□□ 1.22
MSH6P52701 BCRP7-201ENST00000511549 544 ntBASIC22.68■■□□□ 1.22
MSH6P52701 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
MSH6P52701 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC22.68■■□□□ 1.22
MSH6P52701 AL391069.4-201ENST00000609583 481 ntBASIC22.68■■□□□ 1.22
MSH6P52701 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC22.68■■□□□ 1.22
MSH6P52701 AC012317.2-201ENST00000623305 2251 ntBASIC22.68■■□□□ 1.22
MSH6P52701 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
MSH6P52701 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC22.68■■□□□ 1.22
MSH6P52701 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
MSH6P52701 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC22.68■■□□□ 1.22
MSH6P52701 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
MSH6P52701 AL671710.1-201ENST00000610245 2349 ntBASIC22.67■■□□□ 1.22
MSH6P52701 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC22.67■■□□□ 1.22
MSH6P52701 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC22.67■■□□□ 1.22
MSH6P52701 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 AL355312.1-201ENST00000407115 2176 ntBASIC22.67■■□□□ 1.22
MSH6P52701 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC22.67■■□□□ 1.22
MSH6P52701 APOA1-205ENST00000375329 927 ntTSL 2 BASIC22.67■■□□□ 1.22
MSH6P52701 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC22.67■■□□□ 1.22
MSH6P52701 KRT8P13-201ENST00000463294 1010 ntBASIC22.67■■□□□ 1.22
MSH6P52701 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC22.67■■□□□ 1.22
MSH6P52701 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC22.67■■□□□ 1.22
MSH6P52701 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC22.67■■□□□ 1.22
MSH6P52701 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC22.67■■□□□ 1.22
MSH6P52701 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC22.67■■□□□ 1.22
MSH6P52701 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC22.67■■□□□ 1.22
MSH6P52701 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
MSH6P52701 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC22.67■■□□□ 1.22
MSH6P52701 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
MSH6P52701 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
MSH6P52701 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC22.66■■□□□ 1.22
MSH6P52701 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC22.66■■□□□ 1.22
MSH6P52701 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC22.66■■□□□ 1.22
MSH6P52701 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
MSH6P52701 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.66■■□□□ 1.22
MSH6P52701 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC22.66■■□□□ 1.22
MSH6P52701 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
MSH6P52701 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC22.66■■□□□ 1.22
MSH6P52701 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC22.66■■□□□ 1.22
MSH6P52701 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC22.66■■□□□ 1.22
MSH6P52701 AC006033.1-201ENST00000440505 426 ntBASIC22.66■■□□□ 1.22
MSH6P52701 RN7SL399P-201ENST00000471648 279 ntBASIC22.66■■□□□ 1.22
MSH6P52701 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC22.66■■□□□ 1.22
MSH6P52701 AC036164.1-201ENST00000570544 333 ntBASIC22.66■■□□□ 1.22
MSH6P52701 AC010328.2-201ENST00000597698 1111 ntBASIC22.66■■□□□ 1.22
MSH6P52701 AC133539.2-201ENST00000604757 467 ntBASIC22.66■■□□□ 1.22
MSH6P52701 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
MSH6P52701 AC009542.2-202ENST00000619004 1067 ntBASIC22.66■■□□□ 1.22
MSH6P52701 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
MSH6P52701 AL589702.1-201ENST00000641229 1509 ntBASIC22.66■■□□□ 1.22
MSH6P52701 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
MSH6P52701 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
MSH6P52701 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC22.66■■□□□ 1.22
MSH6P52701 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC22.66■■□□□ 1.22
MSH6P52701 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC22.66■■□□□ 1.22
MSH6P52701 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
MSH6P52701 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
MSH6P52701 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
MSH6P52701 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
MSH6P52701 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
MSH6P52701 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
MSH6P52701 MPV17-206ENST00000402722 827 ntTSL 3 BASIC22.65■■□□□ 1.22
MSH6P52701 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
MSH6P52701 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
MSH6P52701 AL139010.1-201ENST00000454878 894 ntBASIC22.65■■□□□ 1.22
MSH6P52701 PTK7-212ENST00000476760 902 ntTSL 2 BASIC22.65■■□□□ 1.22
MSH6P52701 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC22.65■■□□□ 1.22
MSH6P52701 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC22.65■■□□□ 1.22
MSH6P52701 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC22.65■■□□□ 1.22
MSH6P52701 HNRNPA1P13-201ENST00000510646 963 ntBASIC22.65■■□□□ 1.22
MSH6P52701 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC22.65■■□□□ 1.22
MSH6P52701 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC22.65■■□□□ 1.22
MSH6P52701 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC22.65■■□□□ 1.22
MSH6P52701 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
MSH6P52701 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC22.65■■□□□ 1.22
MSH6P52701 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
MSH6P52701 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
MSH6P52701 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
MSH6P52701 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC22.65■■□□□ 1.22
MSH6P52701 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms