Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC13.66□□□□□ -0.22
CDX1P47902 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC13.66□□□□□ -0.22
CDX1P47902 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CDX1P47902 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CDX1P47902 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC13.65□□□□□ -0.22
CDX1P47902 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC13.65□□□□□ -0.22
CDX1P47902 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 AC079776.2-201ENST00000641154 1609 ntBASIC13.65□□□□□ -0.22
CDX1P47902 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.65□□□□□ -0.22
CDX1P47902 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
CDX1P47902 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 AC009949.1-201ENST00000623048 1830 ntBASIC13.65□□□□□ -0.22
CDX1P47902 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 AL031284.1-201ENST00000419297 478 ntBASIC13.65□□□□□ -0.22
CDX1P47902 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
CDX1P47902 AC018712.1-201ENST00000455767 687 ntBASIC13.65□□□□□ -0.22
CDX1P47902 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC13.65□□□□□ -0.22
CDX1P47902 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CDX1P47902 WDR88-203ENST00000592765 651 ntTSL 5 BASIC13.65□□□□□ -0.22
CDX1P47902 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC13.65□□□□□ -0.22
CDX1P47902 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 AC073592.4-201ENST00000623827 446 ntBASIC13.65□□□□□ -0.22
CDX1P47902 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CDX1P47902 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.65□□□□□ -0.22
CDX1P47902 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC13.65□□□□□ -0.22
CDX1P47902 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
CDX1P47902 AL353593.2-201ENST00000602529 1483 ntBASIC13.65□□□□□ -0.22
CDX1P47902 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
CDX1P47902 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC13.65□□□□□ -0.22
CDX1P47902 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDX1P47902 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
CDX1P47902 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC13.65□□□□□ -0.22
CDX1P47902 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC13.65□□□□□ -0.22
CDX1P47902 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
CDX1P47902 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
CDX1P47902 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
CDX1P47902 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC13.64□□□□□ -0.23
CDX1P47902 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC13.64□□□□□ -0.23
CDX1P47902 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC13.64□□□□□ -0.23
CDX1P47902 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 SIGLEC16-201ENST00000599858 1437 ntBASIC13.64□□□□□ -0.23
CDX1P47902 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.64□□□□□ -0.23
CDX1P47902 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC13.64□□□□□ -0.23
CDX1P47902 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC13.64□□□□□ -0.23
CDX1P47902 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CDX1P47902 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CDX1P47902 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC13.64□□□□□ -0.23
CDX1P47902 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
CDX1P47902 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC13.64□□□□□ -0.23
CDX1P47902 AL049757.1-201ENST00000616842 1596 ntBASIC13.64□□□□□ -0.23
CDX1P47902 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.64□□□□□ -0.23
CDX1P47902 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC13.64□□□□□ -0.23
CDX1P47902 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC13.64□□□□□ -0.23
CDX1P47902 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CDX1P47902 PRYP5-201ENST00000451909 266 ntBASIC13.64□□□□□ -0.23
CDX1P47902 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC13.64□□□□□ -0.23
CDX1P47902 AC079776.4-201ENST00000511039 504 ntBASIC13.64□□□□□ -0.23
CDX1P47902 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC13.64□□□□□ -0.23
CDX1P47902 MSRA-206ENST00000521209 814 ntTSL 3 BASIC13.64□□□□□ -0.23
CDX1P47902 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC13.64□□□□□ -0.23
CDX1P47902 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 SART3-203ENST00000546611 1184 ntBASIC13.64□□□□□ -0.23
CDX1P47902 NKAPP1-205ENST00000585790 367 ntBASIC13.64□□□□□ -0.23
CDX1P47902 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC13.64□□□□□ -0.23
CDX1P47902 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms