Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.62■□□□□ 0.25
XRCC1P18887 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
XRCC1P18887 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
XRCC1P18887 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.61■□□□□ 0.25
XRCC1P18887 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
XRCC1P18887 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.61■□□□□ 0.25
XRCC1P18887 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
XRCC1P18887 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
XRCC1P18887 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.61■□□□□ 0.25
XRCC1P18887 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
XRCC1P18887 EGFEM1P-202ENST00000431685 1563 ntBASIC16.61■□□□□ 0.25
XRCC1P18887 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.61■□□□□ 0.25
XRCC1P18887 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.61■□□□□ 0.25
XRCC1P18887 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.61■□□□□ 0.25
XRCC1P18887 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.61■□□□□ 0.25
XRCC1P18887 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.61■□□□□ 0.25
XRCC1P18887 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.61■□□□□ 0.25
XRCC1P18887 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
XRCC1P18887 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
XRCC1P18887 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
XRCC1P18887 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.61■□□□□ 0.25
XRCC1P18887 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
XRCC1P18887 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 PAUPAR-201ENST00000630360 2965 ntBASIC16.6■□□□□ 0.25
XRCC1P18887 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.6■□□□□ 0.25
XRCC1P18887 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
XRCC1P18887 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
XRCC1P18887 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.6■□□□□ 0.25
XRCC1P18887 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.6■□□□□ 0.25
XRCC1P18887 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.6■□□□□ 0.25
XRCC1P18887 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.6■□□□□ 0.25
XRCC1P18887 AC010327.4-202ENST00000591484 748 ntBASIC16.6■□□□□ 0.25
XRCC1P18887 AC023141.13-201ENST00000604991 943 ntBASIC16.6■□□□□ 0.25
XRCC1P18887 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.6■□□□□ 0.25
XRCC1P18887 AL513190.1-201ENST00000621254 727 ntBASIC16.6■□□□□ 0.25
XRCC1P18887 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.6■□□□□ 0.25
XRCC1P18887 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.6■□□□□ 0.25
XRCC1P18887 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.6■□□□□ 0.25
XRCC1P18887 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
XRCC1P18887 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
XRCC1P18887 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.6■□□□□ 0.25
XRCC1P18887 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
XRCC1P18887 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
XRCC1P18887 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.59■□□□□ 0.25
XRCC1P18887 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
XRCC1P18887 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.59■□□□□ 0.25
XRCC1P18887 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.59■□□□□ 0.25
XRCC1P18887 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
XRCC1P18887 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
XRCC1P18887 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
XRCC1P18887 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
XRCC1P18887 AC092364.2-201ENST00000596710 2692 ntBASIC16.59■□□□□ 0.25
XRCC1P18887 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
XRCC1P18887 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
XRCC1P18887 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
XRCC1P18887 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
XRCC1P18887 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
XRCC1P18887 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
XRCC1P18887 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
XRCC1P18887 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms