Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
APOEP02649 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.42■□□□□ 0.38
APOEP02649 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
APOEP02649 AC018695.7-201ENST00000624587 2492 ntBASIC17.42■□□□□ 0.38
APOEP02649 AL603756.1-201ENST00000606511 2163 ntBASIC17.42■□□□□ 0.38
APOEP02649 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
APOEP02649 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
APOEP02649 UPF3AP3-201ENST00000420996 769 ntBASIC17.42■□□□□ 0.38
APOEP02649 GPX1P2-201ENST00000429271 606 ntBASIC17.42■□□□□ 0.38
APOEP02649 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.42■□□□□ 0.38
APOEP02649 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.42■□□□□ 0.38
APOEP02649 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
APOEP02649 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
APOEP02649 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.42■□□□□ 0.38
APOEP02649 AC112191.1-201ENST00000523689 701 ntBASIC17.42■□□□□ 0.38
APOEP02649 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.42■□□□□ 0.38
APOEP02649 C20orf181-201ENST00000623918 480 ntBASIC17.42■□□□□ 0.38
APOEP02649 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
APOEP02649 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
APOEP02649 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
APOEP02649 AC006277.1-201ENST00000624348 1610 ntBASIC17.42■□□□□ 0.38
APOEP02649 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
APOEP02649 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
APOEP02649 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.42■□□□□ 0.38
APOEP02649 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
APOEP02649 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.42■□□□□ 0.38
APOEP02649 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
APOEP02649 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
APOEP02649 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
APOEP02649 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.41■□□□□ 0.38
APOEP02649 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
APOEP02649 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
APOEP02649 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.41■□□□□ 0.38
APOEP02649 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
APOEP02649 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
APOEP02649 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.41■□□□□ 0.38
APOEP02649 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
APOEP02649 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
APOEP02649 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.41■□□□□ 0.38
APOEP02649 FAM58CP-201ENST00000435741 640 ntBASIC17.41■□□□□ 0.38
APOEP02649 AC140658.5-201ENST00000438532 169 ntBASIC17.41■□□□□ 0.38
APOEP02649 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.41■□□□□ 0.38
APOEP02649 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.41■□□□□ 0.38
APOEP02649 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.41■□□□□ 0.38
APOEP02649 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
APOEP02649 AL078644.1-201ENST00000609881 752 ntBASIC17.41■□□□□ 0.38
APOEP02649 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
APOEP02649 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.41■□□□□ 0.38
APOEP02649 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
APOEP02649 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.41■□□□□ 0.38
APOEP02649 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
APOEP02649 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
APOEP02649 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
APOEP02649 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
APOEP02649 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
APOEP02649 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.4■□□□□ 0.38
APOEP02649 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.4■□□□□ 0.38
APOEP02649 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.4■□□□□ 0.38
APOEP02649 AC092919.2-201ENST00000623631 1645 ntBASIC17.4■□□□□ 0.38
APOEP02649 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
APOEP02649 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.4■□□□□ 0.38
APOEP02649 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
APOEP02649 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 AL391256.1-201ENST00000443260 1855 ntBASIC17.4■□□□□ 0.38
APOEP02649 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.4■□□□□ 0.38
APOEP02649 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.4■□□□□ 0.38
APOEP02649 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
APOEP02649 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
APOEP02649 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 AC002056.1-201ENST00000395613 760 ntBASIC17.4■□□□□ 0.38
APOEP02649 MIR1233-2-201ENST00000408138 82 ntBASIC17.4■□□□□ 0.38
APOEP02649 MIR1233-1-201ENST00000408722 82 ntBASIC17.4■□□□□ 0.38
APOEP02649 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.4■□□□□ 0.38
APOEP02649 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.4■□□□□ 0.38
APOEP02649 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
APOEP02649 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.4■□□□□ 0.38
APOEP02649 AL031055.1-201ENST00000606362 631 ntBASIC17.4■□□□□ 0.38
APOEP02649 AC091812.2-201ENST00000619081 385 ntBASIC17.4■□□□□ 0.38
APOEP02649 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.4■□□□□ 0.38
APOEP02649 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
APOEP02649 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
APOEP02649 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
APOEP02649 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.4■□□□□ 0.38
APOEP02649 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
APOEP02649 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms