Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
LDB3O75112 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.63■□□□□ 0.09
LDB3O75112 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LDB3O75112 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.62■□□□□ 0.09
LDB3O75112 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
LDB3O75112 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.62■□□□□ 0.09
LDB3O75112 AC002056.1-201ENST00000395613 760 ntBASIC15.62■□□□□ 0.09
LDB3O75112 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
LDB3O75112 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 AC092474.2-201ENST00000424288 719 ntBASIC15.62■□□□□ 0.09
LDB3O75112 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.62■□□□□ 0.09
LDB3O75112 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.62■□□□□ 0.09
LDB3O75112 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.62■□□□□ 0.09
LDB3O75112 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.62■□□□□ 0.09
LDB3O75112 AC109635.5-201ENST00000533593 962 ntBASIC15.62■□□□□ 0.09
LDB3O75112 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
LDB3O75112 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.62■□□□□ 0.09
LDB3O75112 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
LDB3O75112 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.62■□□□□ 0.09
LDB3O75112 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.62■□□□□ 0.09
LDB3O75112 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
LDB3O75112 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
LDB3O75112 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.62■□□□□ 0.09
LDB3O75112 GPAA1P2-202ENST00000606848 1787 ntBASIC15.62■□□□□ 0.09
LDB3O75112 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDB3O75112 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.62■□□□□ 0.09
LDB3O75112 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDB3O75112 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.61■□□□□ 0.09
LDB3O75112 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
LDB3O75112 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.61■□□□□ 0.09
LDB3O75112 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC15.61■□□□□ 0.09
LDB3O75112 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.61■□□□□ 0.09
LDB3O75112 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
LDB3O75112 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.61■□□□□ 0.09
LDB3O75112 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
LDB3O75112 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
LDB3O75112 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDB3O75112 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDB3O75112 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.61■□□□□ 0.09
LDB3O75112 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LDB3O75112 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LDB3O75112 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
LDB3O75112 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.61■□□□□ 0.09
LDB3O75112 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.61■□□□□ 0.09
LDB3O75112 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDB3O75112 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.61■□□□□ 0.09
LDB3O75112 DNAJB3-201ENST00000446806 729 ntBASIC15.61■□□□□ 0.09
LDB3O75112 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.61■□□□□ 0.09
LDB3O75112 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.61■□□□□ 0.09
LDB3O75112 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.61■□□□□ 0.09
LDB3O75112 AC099522.2-201ENST00000607001 744 ntBASIC15.61■□□□□ 0.09
LDB3O75112 C20orf181-201ENST00000623918 480 ntBASIC15.61■□□□□ 0.09
LDB3O75112 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.61■□□□□ 0.09
LDB3O75112 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.61■□□□□ 0.09
LDB3O75112 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.61■□□□□ 0.09
LDB3O75112 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.61■□□□□ 0.09
LDB3O75112 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LDB3O75112 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
LDB3O75112 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDB3O75112 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDB3O75112 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDB3O75112 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDB3O75112 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.61■□□□□ 0.09
LDB3O75112 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDB3O75112 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
LDB3O75112 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
LDB3O75112 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDB3O75112 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDB3O75112 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC15.6■□□□□ 0.09
LDB3O75112 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms