Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 CDV3-207ENST00000508481 661 ntTSL 3 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 AC074051.2-201ENST00000565115 352 ntBASIC14.59□□□□□ -0.07
NKX3-1Q99801 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 COPE-211ENST00000600932 1144 ntTSL 5 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX3-1Q99801 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.59□□□□□ -0.07
NKX3-1Q99801 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.58□□□□□ -0.07
NKX3-1Q99801 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
NKX3-1Q99801 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
NKX3-1Q99801 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
NKX3-1Q99801 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
NKX3-1Q99801 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
NKX3-1Q99801 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
NKX3-1Q99801 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
NKX3-1Q99801 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NKX3-1Q99801 AL671710.1-201ENST00000610245 2349 ntBASIC14.58□□□□□ -0.08
NKX3-1Q99801 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.58□□□□□ -0.08
NKX3-1Q99801 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NKX3-1Q99801 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.58□□□□□ -0.08
NKX3-1Q99801 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
NKX3-1Q99801 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NKX3-1Q99801 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
NKX3-1Q99801 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC14.58□□□□□ -0.08
NKX3-1Q99801 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
NKX3-1Q99801 SPDYE21P-201ENST00000413323 827 ntBASIC14.58□□□□□ -0.08
NKX3-1Q99801 LINC00982-205ENST00000420957 435 ntBASIC14.58□□□□□ -0.08
NKX3-1Q99801 AL020989.1-201ENST00000422979 469 ntBASIC14.58□□□□□ -0.08
NKX3-1Q99801 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
NKX3-1Q99801 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
NKX3-1Q99801 AP000867.3-201ENST00000524675 377 ntBASIC14.58□□□□□ -0.08
NKX3-1Q99801 TOLLIP-AS1-201ENST00000530897 939 ntBASIC14.58□□□□□ -0.08
NKX3-1Q99801 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC14.58□□□□□ -0.08
NKX3-1Q99801 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC14.58□□□□□ -0.08
NKX3-1Q99801 PRR29-207ENST00000580752 458 ntTSL 3 BASIC14.58□□□□□ -0.08
NKX3-1Q99801 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
NKX3-1Q99801 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NKX3-1Q99801 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
NKX3-1Q99801 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NKX3-1Q99801 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
NKX3-1Q99801 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NKX3-1Q99801 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
NKX3-1Q99801 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
NKX3-1Q99801 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
NKX3-1Q99801 ME2P1-201ENST00000426028 1970 ntBASIC14.58□□□□□ -0.08
NKX3-1Q99801 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.58□□□□□ -0.08
NKX3-1Q99801 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NKX3-1Q99801 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
NKX3-1Q99801 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
NKX3-1Q99801 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
NKX3-1Q99801 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
NKX3-1Q99801 CTNS-203ENST00000399306 803 ntTSL 3 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC14.57□□□□□ -0.08
NKX3-1Q99801 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms