Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTCHD1Q96NR3 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 AL161645.1-201ENST00000622716 1255 ntBASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTCHD1Q96NR3 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 RPS8P6-201ENST00000426177 609 ntBASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 AL671277.1-201ENST00000429656 993 ntBASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 YBX1P5-201ENST00000509441 847 ntBASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 AL691403.2-201ENST00000618460 490 ntBASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
PTCHD1Q96NR3 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 UBALD1-205ENST00000590891 2641 ntBASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTCHD1Q96NR3 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms