Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 AC096734.2-201ENST00000562054 433 ntBASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CDK5RAP3Q96JB5 SNX33P1-201ENST00000592116 1762 ntBASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 SLC25A1P1-201ENST00000528351 927 ntBASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 AC007064.4-201ENST00000637740 555 ntBASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 AL645728.2-201ENST00000641974 660 ntBASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.78■□□□□ 0.6
CDK5RAP3Q96JB5 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 AL118508.1-201ENST00000613502 2345 ntBASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 AL031432.2-201ENST00000566714 459 ntBASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 AL928711.1-201ENST00000570165 459 ntBASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 AC023141.13-201ENST00000604991 943 ntBASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDK5RAP3Q96JB5 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CDK5RAP3Q96JB5 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.77■□□□□ 0.59
CDK5RAP3Q96JB5 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
CDK5RAP3Q96JB5 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.77■□□□□ 0.59
CDK5RAP3Q96JB5 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.76■□□□□ 0.59
CDK5RAP3Q96JB5 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms