Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.6■□□□□ 0.73
NKX2-3Q8TAU0 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
NKX2-3Q8TAU0 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC19.6■□□□□ 0.73
NKX2-3Q8TAU0 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
NKX2-3Q8TAU0 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NKX2-3Q8TAU0 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
NKX2-3Q8TAU0 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NKX2-3Q8TAU0 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 OS9-205ENST00000413095 1660 ntTSL 2 BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 AL135744.1-201ENST00000565098 629 ntBASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 MIR3909-201ENST00000579518 119 ntBASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 NARF-206ENST00000457415 1668 ntTSL 5 BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.59■□□□□ 0.73
NKX2-3Q8TAU0 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
NKX2-3Q8TAU0 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 MIR661-201ENST00000384842 89 ntBASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 CENPM-205ENST00000404067 905 ntTSL 3 BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 FAM58DP-201ENST00000428076 619 ntBASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 SPCS2P4-201ENST00000436160 681 ntBASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 HFE2-206ENST00000634927 506 ntTSL 4 BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 GGT3P-204ENST00000453783 1664 ntBASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
NKX2-3Q8TAU0 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 AC107890.1-201ENST00000422478 521 ntBASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 MEIS3P1-201ENST00000495167 958 ntBASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 AC079140.1-201ENST00000508039 487 ntBASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 TSFM-210ENST00000550559 897 ntTSL 5 BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 AP001059.3-201ENST00000619053 235 ntBASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 AP001350.2-201ENST00000625104 1094 ntBASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 GPAA1P2-202ENST00000606848 1787 ntBASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms