Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 AC051619.7-201ENST00000568314 623 ntBASIC18.06■□□□□ 0.48
VPS52Q8N1B4 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 AJ011932.1-201ENST00000621707 465 ntBASIC18.06■□□□□ 0.48
VPS52Q8N1B4 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 UXT-AS1-201ENST00000590504 1525 ntBASIC18.05■□□□□ 0.48
VPS52Q8N1B4 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 PMS2P4-201ENST00000412466 1052 ntBASIC18.05■□□□□ 0.48
VPS52Q8N1B4 AC055876.3-201ENST00000431496 288 ntBASIC18.05■□□□□ 0.48
VPS52Q8N1B4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 INGX-202ENST00000489074 768 ntBASIC18.05■□□□□ 0.48
VPS52Q8N1B4 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 AC138649.4-201ENST00000612222 287 ntBASIC18.05■□□□□ 0.48
VPS52Q8N1B4 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VPS52Q8N1B4 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 MIR943-201ENST00000401286 94 ntBASIC18.04■□□□□ 0.48
VPS52Q8N1B4 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.04■□□□□ 0.48
VPS52Q8N1B4 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS52Q8N1B4 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
VPS52Q8N1B4 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
VPS52Q8N1B4 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS52Q8N1B4 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS52Q8N1B4 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
VPS52Q8N1B4 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS52Q8N1B4 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms