Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 MTRF1LP2-201ENST00000506027 1122 ntBASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 AC079328.2-201ENST00000561241 3354 ntBASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE3Q6ZMZ3 AC025580.3-201ENST00000617932 1424 ntBASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 AL671710.1-201ENST00000610245 2349 ntBASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 HMGA1P7-201ENST00000406908 502 ntBASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 KRT18P58-201ENST00000527480 1120 ntBASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 AC092171.3-201ENST00000610122 2651 ntBASIC19.59■□□□□ 0.73
SYNE3Q6ZMZ3 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE3Q6ZMZ3 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE3Q6ZMZ3 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.73
SYNE3Q6ZMZ3 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.58■□□□□ 0.73
SYNE3Q6ZMZ3 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.58■□□□□ 0.73
SYNE3Q6ZMZ3 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE3Q6ZMZ3 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC19.58■□□□□ 0.73
SYNE3Q6ZMZ3 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE3Q6ZMZ3 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE3Q6ZMZ3 SNX33P1-201ENST00000592116 1762 ntBASIC19.58■□□□□ 0.73
SYNE3Q6ZMZ3 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE3Q6ZMZ3 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 PCDHB19P-201ENST00000570871 2371 ntBASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms