Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SRP54P61011 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SRP54P61011 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.41■□□□□ 0.22
SRP54P61011 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SRP54P61011 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.41■□□□□ 0.22
SRP54P61011 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SRP54P61011 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SRP54P61011 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.41■□□□□ 0.22
SRP54P61011 MIR770-201ENST00000390219 98 ntBASIC16.41■□□□□ 0.22
SRP54P61011 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SRP54P61011 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.41■□□□□ 0.22
SRP54P61011 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SRP54P61011 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.41■□□□□ 0.22
SRP54P61011 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.41■□□□□ 0.22
SRP54P61011 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SRP54P61011 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
SRP54P61011 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SRP54P61011 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.41■□□□□ 0.22
SRP54P61011 AC027307.2-201ENST00000591252 911 ntBASIC16.41■□□□□ 0.22
SRP54P61011 Z92544.3-201ENST00000624747 417 ntBASIC16.41■□□□□ 0.22
SRP54P61011 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SRP54P61011 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SRP54P61011 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SRP54P61011 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SRP54P61011 AC006277.1-201ENST00000624348 1610 ntBASIC16.41■□□□□ 0.22
SRP54P61011 LINC00895-201ENST00000629028 1637 ntBASIC16.41■□□□□ 0.22
SRP54P61011 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SRP54P61011 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.41■□□□□ 0.22
SRP54P61011 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SRP54P61011 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SRP54P61011 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.4■□□□□ 0.22
SRP54P61011 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.4■□□□□ 0.22
SRP54P61011 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SRP54P61011 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.4■□□□□ 0.22
SRP54P61011 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.4■□□□□ 0.22
SRP54P61011 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.4■□□□□ 0.22
SRP54P61011 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.4■□□□□ 0.22
SRP54P61011 GPS2P2-201ENST00000430745 888 ntBASIC16.4■□□□□ 0.22
SRP54P61011 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.4■□□□□ 0.22
SRP54P61011 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.4■□□□□ 0.22
SRP54P61011 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.4■□□□□ 0.22
SRP54P61011 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.4■□□□□ 0.22
SRP54P61011 AL512356.2-201ENST00000546955 174 ntBASIC16.4■□□□□ 0.22
SRP54P61011 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.4■□□□□ 0.22
SRP54P61011 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.4■□□□□ 0.22
SRP54P61011 AC013467.2-201ENST00000605472 835 ntBASIC16.4■□□□□ 0.22
SRP54P61011 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.4■□□□□ 0.22
SRP54P61011 AP001059.3-201ENST00000619053 235 ntBASIC16.4■□□□□ 0.22
SRP54P61011 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.4■□□□□ 0.22
SRP54P61011 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.4■□□□□ 0.22
SRP54P61011 AC084121.4-201ENST00000641598 221 ntBASIC16.4■□□□□ 0.22
SRP54P61011 AF228730.8-201ENST00000642140 221 ntBASIC16.4■□□□□ 0.22
SRP54P61011 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.4■□□□□ 0.22
SRP54P61011 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.4■□□□□ 0.22
SRP54P61011 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SRP54P61011 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SRP54P61011 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
SRP54P61011 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SRP54P61011 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SRP54P61011 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SRP54P61011 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SRP54P61011 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SRP54P61011 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SRP54P61011 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.39■□□□□ 0.21
SRP54P61011 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SRP54P61011 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SRP54P61011 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SRP54P61011 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
SRP54P61011 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SRP54P61011 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SRP54P61011 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SRP54P61011 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SRP54P61011 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SRP54P61011 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SRP54P61011 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.39■□□□□ 0.21
SRP54P61011 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.39■□□□□ 0.21
SRP54P61011 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.39■□□□□ 0.21
SRP54P61011 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SRP54P61011 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms