Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
SOX3P41225 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.7■□□□□ 0.1
SOX3P41225 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SOX3P41225 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.7■□□□□ 0.1
SOX3P41225 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.7■□□□□ 0.1
SOX3P41225 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SOX3P41225 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SOX3P41225 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SOX3P41225 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
SOX3P41225 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.7■□□□□ 0.1
SOX3P41225 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SOX3P41225 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.7■□□□□ 0.1
SOX3P41225 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
SOX3P41225 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
SOX3P41225 CXCL1P1-201ENST00000502804 216 ntBASIC15.7■□□□□ 0.1
SOX3P41225 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SOX3P41225 AC096734.2-201ENST00000562054 433 ntBASIC15.7■□□□□ 0.1
SOX3P41225 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.7■□□□□ 0.1
SOX3P41225 AC092865.6-201ENST00000642101 219 ntBASIC15.7■□□□□ 0.1
SOX3P41225 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SOX3P41225 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
SOX3P41225 AC002310.6-201ENST00000624451 1377 ntBASIC15.7■□□□□ 0.1
SOX3P41225 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
SOX3P41225 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SOX3P41225 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.7■□□□□ 0.1
SOX3P41225 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.7■□□□□ 0.1
SOX3P41225 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
SOX3P41225 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.7■□□□□ 0.1
SOX3P41225 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
SOX3P41225 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SOX3P41225 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SOX3P41225 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.7■□□□□ 0.1
SOX3P41225 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 AC078925.2-201ENST00000624013 1973 ntBASIC15.69■□□□□ 0.1
SOX3P41225 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
SOX3P41225 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.69■□□□□ 0.1
SOX3P41225 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
SOX3P41225 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.69■□□□□ 0.1
SOX3P41225 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.69■□□□□ 0.1
SOX3P41225 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
SOX3P41225 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 YBX2P1-201ENST00000394192 760 ntBASIC15.69■□□□□ 0.1
SOX3P41225 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.69■□□□□ 0.1
SOX3P41225 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.69■□□□□ 0.1
SOX3P41225 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.69■□□□□ 0.1
SOX3P41225 AC004832.2-201ENST00000426397 482 ntBASIC15.69■□□□□ 0.1
SOX3P41225 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.69■□□□□ 0.1
SOX3P41225 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.69■□□□□ 0.1
SOX3P41225 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.69■□□□□ 0.1
SOX3P41225 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
SOX3P41225 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 AL513190.1-201ENST00000621254 727 ntBASIC15.69■□□□□ 0.1
SOX3P41225 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.69■□□□□ 0.1
SOX3P41225 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
SOX3P41225 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
SOX3P41225 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.69■□□□□ 0.1
SOX3P41225 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.69■□□□□ 0.1
SOX3P41225 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.69■□□□□ 0.1
SOX3P41225 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
SOX3P41225 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SOX3P41225 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
SOX3P41225 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX3P41225 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX3P41225 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
SOX3P41225 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX3P41225 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX3P41225 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.68■□□□□ 0.1
SOX3P41225 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.68■□□□□ 0.1
SOX3P41225 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.68■□□□□ 0.1
SOX3P41225 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
SOX3P41225 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.68■□□□□ 0.1
SOX3P41225 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.68■□□□□ 0.1
SOX3P41225 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.68■□□□□ 0.1
SOX3P41225 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.68■□□□□ 0.1
SOX3P41225 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.68■□□□□ 0.1
SOX3P41225 AC010327.4-202ENST00000591484 748 ntBASIC15.68■□□□□ 0.1
SOX3P41225 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.68■□□□□ 0.1
SOX3P41225 AC004877.2-201ENST00000623941 599 ntBASIC15.68■□□□□ 0.1
SOX3P41225 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms