Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL18A1P39060 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
COL18A1P39060 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL18A1P39060 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL18A1P39060 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL18A1P39060 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC21.54■■□□□ 1.04
COL18A1P39060 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC21.54■■□□□ 1.04
COL18A1P39060 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL18A1P39060 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC21.54■■□□□ 1.04
COL18A1P39060 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL18A1P39060 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL18A1P39060 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL18A1P39060 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL18A1P39060 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL18A1P39060 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC21.53■■□□□ 1.04
COL18A1P39060 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC21.53■■□□□ 1.04
COL18A1P39060 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC21.53■■□□□ 1.04
COL18A1P39060 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC21.53■■□□□ 1.04
COL18A1P39060 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
COL18A1P39060 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL18A1P39060 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
COL18A1P39060 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL18A1P39060 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
COL18A1P39060 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC21.53■■□□□ 1.04
COL18A1P39060 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
COL18A1P39060 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC21.53■■□□□ 1.04
COL18A1P39060 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC21.53■■□□□ 1.04
COL18A1P39060 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
COL18A1P39060 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.53■■□□□ 1.04
COL18A1P39060 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC21.53■■□□□ 1.04
COL18A1P39060 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
COL18A1P39060 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
COL18A1P39060 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL18A1P39060 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL18A1P39060 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
COL18A1P39060 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
COL18A1P39060 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC21.53■■□□□ 1.04
COL18A1P39060 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC21.53■■□□□ 1.04
COL18A1P39060 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC21.53■■□□□ 1.04
COL18A1P39060 AC245100.5-201ENST00000452108 331 ntBASIC21.53■■□□□ 1.04
COL18A1P39060 RN7SL399P-201ENST00000471648 279 ntBASIC21.53■■□□□ 1.04
COL18A1P39060 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
COL18A1P39060 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC21.53■■□□□ 1.04
COL18A1P39060 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC21.53■■□□□ 1.04
COL18A1P39060 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC21.53■■□□□ 1.04
COL18A1P39060 SPIB-207ENST00000597855 564 ntTSL 4 BASIC21.53■■□□□ 1.04
COL18A1P39060 ABBA01031660.1-201ENST00000635219 756 ntBASIC21.53■■□□□ 1.04
COL18A1P39060 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL18A1P39060 HNRNPA1P48-201ENST00000562726 1377 ntBASIC21.53■■□□□ 1.04
COL18A1P39060 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL18A1P39060 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL18A1P39060 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL18A1P39060 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
COL18A1P39060 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
COL18A1P39060 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL18A1P39060 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL18A1P39060 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
COL18A1P39060 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL18A1P39060 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC21.52■■□□□ 1.04
COL18A1P39060 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
COL18A1P39060 U82695.1-201ENST00000635752 1889 ntBASIC21.52■■□□□ 1.04
COL18A1P39060 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL18A1P39060 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL18A1P39060 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL18A1P39060 AC074338.1-201ENST00000416825 156 ntBASIC21.52■■□□□ 1.04
COL18A1P39060 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC21.52■■□□□ 1.04
COL18A1P39060 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
COL18A1P39060 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC21.52■■□□□ 1.04
COL18A1P39060 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC21.52■■□□□ 1.04
COL18A1P39060 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC21.52■■□□□ 1.04
COL18A1P39060 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC21.52■■□□□ 1.04
COL18A1P39060 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL18A1P39060 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
COL18A1P39060 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.52■■□□□ 1.04
COL18A1P39060 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC21.52■■□□□ 1.03
COL18A1P39060 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC21.52■■□□□ 1.03
COL18A1P39060 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
COL18A1P39060 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC21.52■■□□□ 1.03
COL18A1P39060 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COL18A1P39060 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC21.51■■□□□ 1.03
COL18A1P39060 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC21.51■■□□□ 1.03
COL18A1P39060 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL18A1P39060 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC21.51■■□□□ 1.03
COL18A1P39060 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL18A1P39060 RPL13P2-201ENST00000440687 659 ntBASIC21.51■■□□□ 1.03
COL18A1P39060 AC245100.3-201ENST00000441281 285 ntBASIC21.51■■□□□ 1.03
COL18A1P39060 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC21.51■■□□□ 1.03
COL18A1P39060 CTBP2P5-201ENST00000454986 1264 ntBASIC21.51■■□□□ 1.03
COL18A1P39060 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC21.51■■□□□ 1.03
COL18A1P39060 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL18A1P39060 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC21.51■■□□□ 1.03
COL18A1P39060 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL18A1P39060 AL583810.1-201ENST00000553344 1045 ntBASIC21.51■■□□□ 1.03
COL18A1P39060 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC21.51■■□□□ 1.03
COL18A1P39060 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC21.51■■□□□ 1.03
COL18A1P39060 GNRHR2-203ENST00000581100 1187 ntBASIC21.51■■□□□ 1.03
COL18A1P39060 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC21.51■■□□□ 1.03
COL18A1P39060 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
COL18A1P39060 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL18A1P39060 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms