Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.94■□□□□ 0.3
VCANP13611 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCANP13611 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.94■□□□□ 0.3
VCANP13611 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.94■□□□□ 0.3
VCANP13611 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.94■□□□□ 0.3
VCANP13611 MIR3907-201ENST00000579424 151 ntBASIC16.94■□□□□ 0.3
VCANP13611 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.94■□□□□ 0.3
VCANP13611 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCANP13611 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
VCANP13611 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCANP13611 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.94■□□□□ 0.3
VCANP13611 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VCANP13611 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCANP13611 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
VCANP13611 HLA-DQB2-229ENST00000411527 1059 ntBASIC16.94■□□□□ 0.3
VCANP13611 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VCANP13611 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.94■□□□□ 0.3
VCANP13611 IQSEC3P1-201ENST00000538799 536 ntBASIC16.94■□□□□ 0.3
VCANP13611 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.94■□□□□ 0.3
VCANP13611 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
VCANP13611 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
VCANP13611 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VCANP13611 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.93■□□□□ 0.3
VCANP13611 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.93■□□□□ 0.3
VCANP13611 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.93■□□□□ 0.3
VCANP13611 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
VCANP13611 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC16.93■□□□□ 0.3
VCANP13611 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
VCANP13611 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC16.93■□□□□ 0.3
VCANP13611 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VCANP13611 NDUFV2P1-201ENST00000596415 907 ntBASIC16.93■□□□□ 0.3
VCANP13611 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VCANP13611 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.93■□□□□ 0.3
VCANP13611 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VCANP13611 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VCANP13611 CLK3P2-201ENST00000427566 1453 ntBASIC16.93■□□□□ 0.3
VCANP13611 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC16.93■□□□□ 0.3
VCANP13611 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC16.93■□□□□ 0.3
VCANP13611 AC126915.1-201ENST00000522847 1038 ntBASIC16.93■□□□□ 0.3
VCANP13611 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC16.93■□□□□ 0.3
VCANP13611 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.93■□□□□ 0.3
VCANP13611 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC16.93■□□□□ 0.3
VCANP13611 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.93■□□□□ 0.3
VCANP13611 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VCANP13611 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.93■□□□□ 0.3
VCANP13611 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VCANP13611 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
VCANP13611 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC16.92■□□□□ 0.3
VCANP13611 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.92■□□□□ 0.3
VCANP13611 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.92■□□□□ 0.3
VCANP13611 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.92■□□□□ 0.3
VCANP13611 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.92■□□□□ 0.3
VCANP13611 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
VCANP13611 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VCANP13611 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.92■□□□□ 0.3
VCANP13611 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.92■□□□□ 0.3
VCANP13611 AC134698.3-201ENST00000523880 214 ntBASIC16.92■□□□□ 0.3
VCANP13611 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC16.92■□□□□ 0.3
VCANP13611 CU634019.7-201ENST00000624153 1185 ntBASIC16.92■□□□□ 0.3
VCANP13611 FP236241.2-201ENST00000624906 1185 ntBASIC16.92■□□□□ 0.3
VCANP13611 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCANP13611 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCANP13611 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCANP13611 WIZP1-201ENST00000531444 2299 ntBASIC16.91■□□□□ 0.3
VCANP13611 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.91■□□□□ 0.3
VCANP13611 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.91■□□□□ 0.3
VCANP13611 AC244669.2-201ENST00000612320 853 ntBASIC16.91■□□□□ 0.3
VCANP13611 AC091812.3-201ENST00000621362 345 ntBASIC16.91■□□□□ 0.3
VCANP13611 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.91■□□□□ 0.3
VCANP13611 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCANP13611 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
VCANP13611 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
VCANP13611 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.91■□□□□ 0.3
VCANP13611 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCANP13611 AC005332.8-201ENST00000622750 2735 ntBASIC16.91■□□□□ 0.3
VCANP13611 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.91■□□□□ 0.3
VCANP13611 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.91■□□□□ 0.3
VCANP13611 AC079316.1-201ENST00000548397 411 ntBASIC16.91■□□□□ 0.3
VCANP13611 DGAT2L7P-201ENST00000602462 744 ntBASIC16.91■□□□□ 0.3
VCANP13611 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC16.91■□□□□ 0.3
VCANP13611 AC079336.7-201ENST00000623428 1078 ntBASIC16.91■□□□□ 0.3
VCANP13611 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
VCANP13611 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
VCANP13611 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms