Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 IPPK-202ENST00000375522 882 ntTSL 3 BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 AP002414.1-201ENST00000391405 1147 ntBASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 UNC93B7-201ENST00000509439 705 ntBASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 IRF8-202ENST00000562492 946 ntTSL 3 BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 AC139887.3-201ENST00000568585 713 ntBASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RHBDD3Q9Y3P4 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 LINC00895-201ENST00000629028 1637 ntBASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 AC021087.4-201ENST00000563761 564 ntBASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 SDCCAG3P1-201ENST00000589292 1150 ntBASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 TERC-201ENST00000602385 541 ntBASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 MTHFR-217ENST00000641820 1569 ntBASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RHBDD3Q9Y3P4 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 ME2P1-201ENST00000426028 1970 ntBASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC14.62□□□□□ -0.07
RHBDD3Q9Y3P4 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms