Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 FAM207CP-201ENST00000443486 507 ntBASIC16.16■□□□□ 0.18
LMX1AQ8TE12 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 CFL1-212ENST00000531413 636 ntTSL 3 BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.16■□□□□ 0.18
LMX1AQ8TE12 AC239800.4-201ENST00000603712 296 ntBASIC16.16■□□□□ 0.18
LMX1AQ8TE12 SPDYE12P-201ENST00000618416 771 ntBASIC16.16■□□□□ 0.18
LMX1AQ8TE12 AC008761.3-201ENST00000624803 892 ntBASIC16.16■□□□□ 0.18
LMX1AQ8TE12 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 AL353705.2-201ENST00000428243 662 ntBASIC16.15■□□□□ 0.18
LMX1AQ8TE12 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 AC100757.3-201ENST00000622361 1406 ntBASIC16.15■□□□□ 0.18
LMX1AQ8TE12 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
LMX1AQ8TE12 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.18
LMX1AQ8TE12 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.14■□□□□ 0.18
LMX1AQ8TE12 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 AL391256.1-201ENST00000443260 1855 ntBASIC16.14■□□□□ 0.17
LMX1AQ8TE12 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 MCC-208ENST00000514701 2855 ntTSL 2 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 SNX33P1-201ENST00000592116 1762 ntBASIC16.14■□□□□ 0.17
LMX1AQ8TE12 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.14■□□□□ 0.17
LMX1AQ8TE12 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 AC015922.1-201ENST00000421102 1152 ntBASIC16.14■□□□□ 0.17
LMX1AQ8TE12 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 MTND6P24-201ENST00000440466 518 ntBASIC16.14■□□□□ 0.17
LMX1AQ8TE12 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.14■□□□□ 0.17
LMX1AQ8TE12 AC004890.2-204ENST00000481968 304 ntBASIC16.14■□□□□ 0.17
LMX1AQ8TE12 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 RNA5SP410-201ENST00000516285 106 ntBASIC16.14■□□□□ 0.17
LMX1AQ8TE12 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
LMX1AQ8TE12 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms