Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RN7SL219P-201ENST00000582872 296 ntBASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 AP001350.2-201ENST00000625104 1094 ntBASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 IMPDH1P4-201ENST00000445028 1534 ntBASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC88AQ3V6T2 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 ZNF767P-206ENST00000513792 565 ntBASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 AC092337.1-201ENST00000568699 1129 ntBASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC20.08■□□□□ 0.81
CCDC88AQ3V6T2 AC005332.8-201ENST00000622750 2735 ntBASIC20.08■□□□□ 0.8
CCDC88AQ3V6T2 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC88AQ3V6T2 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
CCDC88AQ3V6T2 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC88AQ3V6T2 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC20.08■□□□□ 0.8
CCDC88AQ3V6T2 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC88AQ3V6T2 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC88AQ3V6T2 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 BRWD1P1-201ENST00000401091 371 ntBASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 CD74-212ENST00000524315 584 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 MAX-210ENST00000555419 765 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC88AQ3V6T2 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 PCDHB17P-201ENST00000539533 2393 ntBASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 SNX33P1-201ENST00000592116 1762 ntBASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 AC061975.2-201ENST00000581722 295 ntBASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 AC244093.1-201ENST00000610837 814 ntBASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC88AQ3V6T2 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms