Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXA1P49639 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
HOXA1P49639 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC13.91□□□□□ -0.18
HOXA1P49639 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
HOXA1P49639 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC13.91□□□□□ -0.18
HOXA1P49639 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13.91□□□□□ -0.18
HOXA1P49639 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXA1P49639 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC13.91□□□□□ -0.18
HOXA1P49639 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC13.91□□□□□ -0.18
HOXA1P49639 AC111152.3-201ENST00000569699 673 ntBASIC13.91□□□□□ -0.18
HOXA1P49639 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 AL390719.2-201ENST00000606993 987 ntBASIC13.91□□□□□ -0.18
HOXA1P49639 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
HOXA1P49639 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC13.91□□□□□ -0.18
HOXA1P49639 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXA1P49639 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXA1P49639 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXA1P49639 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
HOXA1P49639 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXA1P49639 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXA1P49639 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 Z83836.1-201ENST00000624605 1642 ntBASIC13.9□□□□□ -0.18
HOXA1P49639 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
HOXA1P49639 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC13.9□□□□□ -0.18
HOXA1P49639 PRAL-201ENST00000624952 3286 ntBASIC13.9□□□□□ -0.18
HOXA1P49639 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 AC015656.1-201ENST00000624209 3578 ntBASIC13.9□□□□□ -0.18
HOXA1P49639 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC13.9□□□□□ -0.18
HOXA1P49639 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC13.9□□□□□ -0.18
HOXA1P49639 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC13.9□□□□□ -0.18
HOXA1P49639 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 AL596275.1-201ENST00000423464 877 ntBASIC13.9□□□□□ -0.18
HOXA1P49639 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC13.9□□□□□ -0.18
HOXA1P49639 PON3-205ENST00000451904 1053 ntTSL 3 BASIC13.9□□□□□ -0.18
HOXA1P49639 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC13.9□□□□□ -0.18
HOXA1P49639 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC13.9□□□□□ -0.18
HOXA1P49639 AC005363.2-201ENST00000618631 242 ntBASIC13.9□□□□□ -0.18
HOXA1P49639 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC13.9□□□□□ -0.18
HOXA1P49639 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC13.9□□□□□ -0.18
HOXA1P49639 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
HOXA1P49639 AC023908.3-201ENST00000564211 3047 ntBASIC13.9□□□□□ -0.18
HOXA1P49639 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
HOXA1P49639 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC13.9□□□□□ -0.18
HOXA1P49639 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
HOXA1P49639 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXA1P49639 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
HOXA1P49639 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC13.9□□□□□ -0.19
HOXA1P49639 AC097374.2-201ENST00000618617 1306 ntBASIC13.9□□□□□ -0.19
HOXA1P49639 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
HOXA1P49639 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC13.89□□□□□ -0.19
HOXA1P49639 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.89□□□□□ -0.19
HOXA1P49639 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC13.89□□□□□ -0.19
HOXA1P49639 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC13.89□□□□□ -0.19
HOXA1P49639 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC13.89□□□□□ -0.19
HOXA1P49639 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms