Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
APOBP04114 CLK3P2-201ENST00000427566 1453 ntBASIC10.19□□□□□ -0.78
APOBP04114 Z97205.2-201ENST00000564697 1639 ntBASIC10.19□□□□□ -0.78
APOBP04114 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
APOBP04114 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
APOBP04114 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
APOBP04114 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC10.19□□□□□ -0.78
APOBP04114 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
APOBP04114 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC10.19□□□□□ -0.78
APOBP04114 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
APOBP04114 BX284668.4-201ENST00000453917 508 ntBASIC10.19□□□□□ -0.78
APOBP04114 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
APOBP04114 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
APOBP04114 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
APOBP04114 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC10.18□□□□□ -0.78
APOBP04114 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
APOBP04114 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC10.18□□□□□ -0.78
APOBP04114 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC10.18□□□□□ -0.78
APOBP04114 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC10.18□□□□□ -0.78
APOBP04114 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 MPV17-204ENST00000399052 749 ntTSL 4 BASIC10.18□□□□□ -0.78
APOBP04114 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
APOBP04114 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC10.18□□□□□ -0.78
APOBP04114 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC10.18□□□□□ -0.78
APOBP04114 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 LOX-206ENST00000639739 1626 ntTSL 5 BASIC10.18□□□□□ -0.78
APOBP04114 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC10.18□□□□□ -0.78
APOBP04114 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 DEK-201ENST00000244776 1441 ntTSL 2 BASIC10.18□□□□□ -0.78
APOBP04114 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC10.18□□□□□ -0.78
APOBP04114 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC10.18□□□□□ -0.78
APOBP04114 TSACC-208ENST00000481479 741 ntTSL 2 BASIC10.18□□□□□ -0.78
APOBP04114 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC10.18□□□□□ -0.78
APOBP04114 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC10.18□□□□□ -0.78
APOBP04114 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
APOBP04114 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC10.18□□□□□ -0.78
APOBP04114 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
APOBP04114 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC10.18□□□□□ -0.78
APOBP04114 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC10.18□□□□□ -0.78
APOBP04114 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC10.18□□□□□ -0.78
APOBP04114 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC10.18□□□□□ -0.78
APOBP04114 SOCS2P1-201ENST00000417727 557 ntBASIC10.18□□□□□ -0.78
APOBP04114 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC10.18□□□□□ -0.78
APOBP04114 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC10.18□□□□□ -0.78
APOBP04114 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC10.18□□□□□ -0.78
APOBP04114 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
APOBP04114 LDHBP1-201ENST00000455730 1119 ntBASIC10.17□□□□□ -0.78
APOBP04114 SUOX-214ENST00000551841 906 ntTSL 3 BASIC10.17□□□□□ -0.78
APOBP04114 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC10.17□□□□□ -0.78
APOBP04114 PIGL-212ENST00000581006 554 ntTSL 4 BASIC10.17□□□□□ -0.78
APOBP04114 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 AC005252.2-201ENST00000624630 1141 ntBASIC10.17□□□□□ -0.78
APOBP04114 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC10.17□□□□□ -0.78
APOBP04114 BOC-212ENST00000485230 2173 ntTSL 2 BASIC10.17□□□□□ -0.78
APOBP04114 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC10.17□□□□□ -0.78
APOBP04114 USE1-206ENST00000595101 1776 ntTSL 2 BASIC10.17□□□□□ -0.78
APOBP04114 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC10.17□□□□□ -0.78
APOBP04114 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC10.17□□□□□ -0.78
APOBP04114 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC10.17□□□□□ -0.78
APOBP04114 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
APOBP04114 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
APOBP04114 RPS3-201ENST00000278572 907 ntTSL 3 BASIC10.17□□□□□ -0.78
APOBP04114 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC10.17□□□□□ -0.78
APOBP04114 RPL13P2-201ENST00000440687 659 ntBASIC10.17□□□□□ -0.78
APOBP04114 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC10.17□□□□□ -0.78
APOBP04114 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC10.17□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms