Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 KLK8-202ENST00000320838 456 ntTSL 5 BASIC21.74■■□□□ 1.07
COL3A1P02461 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
COL3A1P02461 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC21.74■■□□□ 1.07
COL3A1P02461 VMA21-202ENST00000370361 693 ntTSL 5 BASIC21.74■■□□□ 1.07
COL3A1P02461 AC003101.2-201ENST00000612557 442 ntBASIC21.74■■□□□ 1.07
COL3A1P02461 AC004790.1-201ENST00000612686 536 ntBASIC21.74■■□□□ 1.07
COL3A1P02461 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL3A1P02461 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
COL3A1P02461 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL3A1P02461 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL3A1P02461 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL3A1P02461 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL3A1P02461 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL3A1P02461 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL3A1P02461 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL3A1P02461 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
COL3A1P02461 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL3A1P02461 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL3A1P02461 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL3A1P02461 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC21.73■■□□□ 1.07
COL3A1P02461 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL3A1P02461 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL3A1P02461 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL3A1P02461 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL3A1P02461 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL3A1P02461 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
COL3A1P02461 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC21.73■■□□□ 1.07
COL3A1P02461 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC21.73■■□□□ 1.07
COL3A1P02461 AC009477.1-201ENST00000452936 217 ntBASIC21.73■■□□□ 1.07
COL3A1P02461 TMPRSS11CP-201ENST00000453277 683 ntBASIC21.73■■□□□ 1.07
COL3A1P02461 HLA-V-204ENST00000476601 1289 ntBASIC21.73■■□□□ 1.07
COL3A1P02461 NAA38-207ENST00000576861 556 ntTSL 3 BASIC21.73■■□□□ 1.07
COL3A1P02461 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC21.73■■□□□ 1.07
COL3A1P02461 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL3A1P02461 HFE2-206ENST00000634927 506 ntTSL 4 BASIC21.73■■□□□ 1.07
COL3A1P02461 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
COL3A1P02461 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC21.73■■□□□ 1.07
COL3A1P02461 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC21.73■■□□□ 1.07
COL3A1P02461 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC21.73■■□□□ 1.07
COL3A1P02461 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL3A1P02461 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL3A1P02461 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC21.73■■□□□ 1.07
COL3A1P02461 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
COL3A1P02461 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL3A1P02461 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL3A1P02461 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL3A1P02461 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL3A1P02461 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL3A1P02461 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL3A1P02461 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL3A1P02461 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL3A1P02461 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC21.72■■□□□ 1.07
COL3A1P02461 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC21.72■■□□□ 1.07
COL3A1P02461 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL3A1P02461 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC21.72■■□□□ 1.07
COL3A1P02461 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC21.72■■□□□ 1.07
COL3A1P02461 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL3A1P02461 AC024267.1-201ENST00000582320 895 ntBASIC21.72■■□□□ 1.07
COL3A1P02461 RN7SL828P-201ENST00000607615 303 ntBASIC21.72■■□□□ 1.07
COL3A1P02461 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL3A1P02461 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL3A1P02461 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC21.72■■□□□ 1.07
COL3A1P02461 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL3A1P02461 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL3A1P02461 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL3A1P02461 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC21.72■■□□□ 1.07
COL3A1P02461 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
COL3A1P02461 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC21.72■■□□□ 1.07
COL3A1P02461 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL3A1P02461 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL3A1P02461 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC21.72■■□□□ 1.07
COL3A1P02461 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
COL3A1P02461 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 RPL37AP1-201ENST00000412502 279 ntBASIC21.71■■□□□ 1.07
COL3A1P02461 SYS1-203ENST00000414310 795 ntTSL 3 BASIC21.71■■□□□ 1.07
COL3A1P02461 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC21.71■■□□□ 1.07
COL3A1P02461 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
COL3A1P02461 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC21.71■■□□□ 1.07
COL3A1P02461 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC21.71■■□□□ 1.07
COL3A1P02461 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC21.71■■□□□ 1.07
COL3A1P02461 MAX-210ENST00000555419 765 ntTSL 5 BASIC21.71■■□□□ 1.07
COL3A1P02461 DUT-210ENST00000559935 569 ntTSL 3 BASIC21.71■■□□□ 1.07
COL3A1P02461 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC21.71■■□□□ 1.07
COL3A1P02461 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC21.71■■□□□ 1.07
COL3A1P02461 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 AL035456.1-201ENST00000456064 1369 ntBASIC21.71■■□□□ 1.07
COL3A1P02461 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC21.71■■□□□ 1.07
COL3A1P02461 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC21.71■■□□□ 1.07
COL3A1P02461 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
COL3A1P02461 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC21.71■■□□□ 1.07
COL3A1P02461 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL3A1P02461 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC21.71■■□□□ 1.07
COL3A1P02461 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms