Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 AL596087.1-201ENST00000400979 1969 ntBASIC16.61■□□□□ 0.25
TREX1Q9NSU2 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 AL031055.1-201ENST00000606362 631 ntBASIC16.61■□□□□ 0.25
TREX1Q9NSU2 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TREX1Q9NSU2 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 AC006449.6-201ENST00000612330 2296 ntBASIC16.6■□□□□ 0.25
TREX1Q9NSU2 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 AC034105.1-201ENST00000563488 319 ntBASIC16.6■□□□□ 0.25
TREX1Q9NSU2 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 AC021097.1-201ENST00000607902 574 ntBASIC16.6■□□□□ 0.25
TREX1Q9NSU2 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.6■□□□□ 0.25
TREX1Q9NSU2 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 PMS2P4-201ENST00000412466 1052 ntBASIC16.59■□□□□ 0.25
TREX1Q9NSU2 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.59■□□□□ 0.25
TREX1Q9NSU2 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms